Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02909 ATGGTTTGGCCTCAGAGGTCCATTTTAGTCGTAGCAGTTTTCAATATGAACATGAATGTTATTCTCATTCTCCACTTCCTATGTTTCTTTATTTTAAGTACTTTGTTCATTAAAGCATCTGCAATAAATTCAACCTATGAATCTGATAGAATAATCTACCTTCCTGGTCAACCTTCAAGCCCCTCAGTCTCACACTTTTCAGGTTACATCACTGTCAATGAAAACCATGGAAGGGCCCTTTTCTACTGGTTTTTCGAAGCTCAGTCTGAACCCTCCAAGAAGCCTCTTCTTCTTTGGCTCAATGGGGGACCTGGATGCTCCTCTATTGGGTATGGTGCCGTTGTTGAGATTGGACCTCTTTTAGTCAACAAAAACGGGGAAGGACTACATTTCAACACATATTCCTGGAACCAAGAAGCAAATTTGTTATTTGTGGAGTCCCCTGTTGGAGTTGGATTTTCTTATACAAACACCTCTTCTGATCTCACCAAATTAGAGGATAATTTTGTGGCTGAGGATGCCTACAACTTCTTGGTGAATTGGCTACAAAGATTCCCACAGTTCAAATCCAGGGAATTTTTTATATCAGGAGAAAGCTACGGTGGTCACTATATCCCTCAGCTTGCAGAGTTAATCTTTGATCGAAACAAAGATAGCAGCAAATACCCCTTTATTAATCTCAAAGGTTTTATTGTAAGGAACCCAGAGACTGATGATTACTATGACAATAAAGGCCTTCTGGAATATGCATGGAGCCACGCAGTTATATCAGACCAGCAATATGAGAAAGCAAAACAAGTATGTGATTTTAAACAATTTGAATGGTCTAATGAATGCAATAAGGCCATGAACGAAGTCTTCCAAGATTACTCTGAAATTGACATATACAACATTTATGCCCCGGCATGTCCTTTAAACAGCACATCCTCAGCTGATGACAGCAACAGTAATGACCCTGAATCATTTACTAAGGTGAGAAATGATTACAGACCAAGGAGGATGAGAATTTTTGGAGGCTATGACCCTTGTTATTCCAATTATGCAGAAGAATATTTCAATAGAAAAGATGTTCAGTCATCTTTTCATGCAGATACTAAAAGAGGCACTGACGAAGCATGGAATGTTTGCAATAACTCCATATTACGGTCTTACAACTTCTCTGTTTTCTCGGTCCTACCCATCTACACCAAACTCATCAAGGGTGGGCTTAAGATATGGATTTACAGTGGAGACGCAGATGGGAGAGTGCCGGTGATAGGGACACGCTGTTGCGTCGAGGCTCTTGGATTACCTCTCAAGTCTGGATGGCGAACCTGGTACCATGATAATCAGGTTGGAGGAAGAATAGAGGAATATGAAGGATTGACATATGTGACAGTGAGAGGAGCTGGACATTTGGTGCCATTGAACAAGCCTAGTCAAGCTCTCTCCCTAATCCATTCTTTCTTAACTGCCCAACATCTTCCTACTCATGGATAA 1479 0.4077 MVWPQRSILVVAVFNMNMNVILILHFLCFFILSTLFIKASAINSTYESDRIIYLPGQPSSPSVSHFSGYITVNENHGRALFYWFFEAQSEPSKKPLLLWLNGGPGCSSIGYGAVVEIGPLLVNKNGEGLHFNTYSWNQEANLLFVESPVGVGFSYTNTSSDLTKLEDNFVAEDAYNFLVNWLQRFPQFKSREFFISGESYGGHYIPQLAELIFDRNKDSSKYPFINLKGFIVRNPETDDYYDNKGLLEYAWSHAVISDQQYEKAKQVCDFKQFEWSNECNKAMNEVFQDYSEIDIYNIYAPACPLNSTSSADDSNSNDPESFTKVRNDYRPRRMRIFGGYDPCYSNYAEEYFNRKDVQSSFHADTKRGTDEAWNVCNNSILRSYNFSVFSVLPIYTKLIKGGLKIWIYSGDADGRVPVIGTRCCVEALGLPLKSGWRTWYHDNQVGGRIEEYEGLTYVTVRGAGHLVPLNKPSQALSLIHSFLTAQHLPTHG 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02909 492 Gene3D - 391 484 - -
Spst3g02909 492 Pfam Serine carboxypeptidase 55 484 IPR001563 GO:0004185|GO:0006508
Spst3g02909 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 132 144 IPR001563 GO:0004185|GO:0006508
Spst3g02909 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 455 468 IPR001563 GO:0004185|GO:0006508
Spst3g02909 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 181 206 IPR001563 GO:0004185|GO:0006508
Spst3g02909 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 145 155 IPR001563 GO:0004185|GO:0006508
Spst3g02909 492 FunFam Carboxypeptidase 391 485 - -
Spst3g02909 492 Gene3D alpha/beta hydrolase 45 305 IPR029058 -
Spst3g02909 492 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 52 472 IPR001563 GO:0004185|GO:0006508
Spst3g02909 492 ProSitePatterns Serine carboxypeptidases, serine active site. 195 202 IPR018202 GO:0004185
Spst3g02909 492 SUPERFAMILY alpha/beta-Hydrolases 47 488 IPR029058 -
Spst3g02909 492 Gene3D - 343 380 - -
Spst3g02909 492 ProSitePatterns Serine carboxypeptidases, histidine active site. 455 472 IPR033124 GO:0004185
Spst3g02909 492 FunFam Carboxypeptidase 45 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02909 Spst-Chr3 78747456 78750130 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02909 344 488 Calmodulin-binding Proteins AT2G22960 28.082 1.23e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02909 K16297 - gmx:100815141 900.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02909 3 78747456 78750130 Spst3g02909 3 78747456 78750130 ECH