Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02898 ATGATCGTCAGCCCAAAGATGGTAGCGGAAGCGGAAATTATCTGTCAGCAGAGCATTCCGATGCTGGACGTCAAGTATCATATTTGCGTGGCGCAAGAACACAAGGTCGAGGTTGAGGTTTCGCCCAAATCGCCTTCACCTTCTGTTCCGATCTTTGGCCAAGCAGTGAATCGCCCTGATATCATTGAAGATTCCATTTTGGAGACCCCTGCAGTGAGTTTTATCCCGAATGTGCGTTCCGGTAGCTATACTGAGATTGGGCCTCGGGTTTCTATGGATGATGAGCACATTTGTATTGATGATCTAGGTGCTCATCTTGGATTTGTGCTCAAGTGCCCAATACGGAGTGCGTTTTATGCAATTTTTGATGGTCATGGAGGGCCTGACGCTGCTGCTTTTGTCAAGAGACATGCTATGAGATTGTTTTTTGAAGATGCGGACATGCTGCAGTCATATGATACTGATGCGTTCTTTCTAGAGAAGTTGGAGGATTCCCATAGGAGAGCTTTCCTACGGGCAGATCTTGCCTTGGCTGGTGAACAATCTGTTAGTAGTTCATGTGGGACCACTGCATTGACTGCCCTTGTACTTGGAAGGCACTTGCTTGTTGCTAATGCTGGTGACTGTCGAGCAGTTCTTTGCCGGAGAGGTGTGGCTGTTGATATGTCTAATGATCACAGGCCAAGTTTTCTGCCGGAACAGAGGAGGGTGGAGGAGGTAGGTGGATTTATTGATGATGGATACCTCAATGGTTATCTTTCAGTAACCCGTGCCCTTGGGGATTGGGACTTGAAATTTCCACTCGGTGCTGCATCTCCTCTTATTGCTGAGCCAGATGTTCGACTGGCTACATTGACTGAGGAGGATGAATTCTTGATCATTGGGTGTGATGGGATTTGGGATGTAATGTCTAGCCAAGTTGCAGTTAGTCTTGTTCGCCGAGGATTAAGAAGGCATGATGACCCACAGCAGTGTGCCAGGGAACTAGTCAAGGAAGCATTGCGCCTAAATACATCGGATAATCTCACTGTGATTGTTGTATGTTTGTCGCCCATTGAAAGCATTGTTGAATCATGTTCGCCCCGAAGGCGAAGATTCAAAGTTTGCAGCCTGTCTGAAGAGGCCCGAAATAGGTTGAAGAGCTTGATTGAGGGAAATTGA 1161 0.4711 MIVSPKMVAEAEIICQQSIPMLDVKYHICVAQEHKVEVEVSPKSPSPSVPIFGQAVNRPDIIEDSILETPAVSFIPNVRSGSYTEIGPRVSMDDEHICIDDLGAHLGFVLKCPIRSAFYAIFDGHGGPDAAAFVKRHAMRLFFEDADMLQSYDTDAFFLEKLEDSHRRAFLRADLALAGEQSVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRRGVAVDMSNDHRPSFLPEQRRVEEVGGFIDDGYLNGYLSVTRALGDWDLKFPLGAASPLIAEPDVRLATLTEEDEFLIIGCDGIWDVMSSQVAVSLVRRGLRRHDDPQQCARELVKEALRLNTSDNLTVIVVCLSPIESIVESCSPRRRRFKVCSLSEEARNRLKSLIEGN 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02898 386 ProSitePatterns PPM-type phosphatase domain signature. 118 126 IPR000222 GO:0043169
Spst3g02898 386 SMART PP2C_SIG_2 94 349 IPR001932 -
Spst3g02898 386 Pfam Protein phosphatase 2C 89 341 IPR001932 -
Spst3g02898 386 ProSiteProfiles PPM-type phosphatase domain profile. 79 349 IPR001932 -
Spst3g02898 386 FunFam Probable protein phosphatase 2C 22 64 352 - -
Spst3g02898 386 Gene3D - 68 352 IPR036457 -
Spst3g02898 386 PANTHER PROTEIN PHOSPHATASE 2C 83 347 IPR015655 GO:0004722|GO:0006470
Spst3g02898 386 SMART PP2C_4 69 347 IPR001932 -
Spst3g02898 386 CDD PP2Cc 79 349 IPR001932 -
Spst3g02898 386 SUPERFAMILY PP2C-like 72 351 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02898 Spst-Chr3 78606856 78608458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02898 1 385 PP2C-type Phosphatase Gene Family AT1G48040 56.675 4.54e-145 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02898 K14803 - gmx:100781949 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02898 3 78606856 78608458 Spst3g02898 3 78606856 78608458 ECH
Spst3g02898 3 78606856 78608458 Spst6g01497 6 14045137 14046981 PCT