Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02887 ATGGCAGAGACCGCAAAATATATTCCCAACTCACAATTAGAACTTGAAGAGATATTGCAAGAAGCAGAACATCGTTGGCTTCGACCTGTTGAAATATGTGAGATACTTCGCAACTATAAGAAGTTTAAGTTGACACCAGATCCACCTATTAGGCCTCCAGCCGGATCACTATTCTTATTTGATCGAAAAGCACTCCGTTATTTTCGAAAGGATGGTCACCGATGGAGGAAGAAAAAAGATGGGAAGACCATAAGAGAAGCTCATGAAAAGTTGAAGGCTGGTAGTGTGGATGTGTTGCATTGTTACTATGCCCATGGTGAGGATAACGAAAGCTTCCAACGGAGAAGTTATTGGATGCTTGACGATGTGTCTGGTCGATCTCAATCTGAACAGGCCAGCACAGGGCAGTTAGAGCATGTAGTCCTTGTTCATTATCGTGAAACTAAAGAGAGCTGCAATTCCAGCATCTCAAATTTGCCTGTAGTTCCGGTAACCCTGGTTGGCCGATCTCAAAATAGTTCAGTGCTTTCCTCTTGCAAAATAAACACACCAATATCTGTAGTTCAAAAATCTTTCACATCAAGTGCTAATAAACATGGATACTCTTCAGAGTATGAGCATGTCAATTCAAAGGATGGTCCTCAGGCCTCCTCTCATGCTCAGCCTGTCAGCAATTCCATAATTCACAGTGCATCTTGGCATACACATGAAGTTGCTGGGTTTTGTGAGTTGTTGAGGAACCCCTTGATTTCAACATGGTCATCTACAATCCCTAGCTATTCTCCTGGTACTGTCTTGTCTCCCTGGACTTCAATTCAGAATTCTAGCAGAGACATAATTTATATGCATGATGGAAAACATCATGTTGACGGATCTGTTGATGGCTTAGAAGCTGACTTCACTGTTCATAAGCTAAACAGTGCTAAGTTAGATGCTGTTAACAGAATGCAAGATGGTGTAATTTTTGGAGATAGACTCGTCACTGGCATGTACATCCAGCCAGTTGAAGATTTACTAACTGTTAATCAGGCTTCTGCATGTTTCAAATGCAATCTTGTTCATGTGGTGCAAAATGAGCATGATCTAGATACATTCCATGCTCAATTATATGATCATCCAGTTGTTGCAAATACTAAAACCATAGTTGAACAGAAACTTAAAGATGGTGGTTTAGATAATGATGAATCAGAACGGGTTGAATCTGGGGAAATGAAGAAACTTGATAGTTTCGGAAGGTGGATGGATAAAGAGATTGGTGGAGACTGTGATAATTCCTTGATGGCTTCAGATTCTGGTAATTATTGGAGTACAATTGATGCTCATAATGAGGATAAAGAGGTATCTAGTTTACGGCACACACAGTTGGATATGGATTCATTAGGCCCTTCTCTTTCCCAAGAACAACTATTTAGTATCCATGACTTTTCTCCAGATTGGGCATATACTGGGGTTAGAACAAAGGTTTTAATAGTTGGCACGTTTCTGGGGAGTAAAAAGCTCTCAAGTGAAACCAAATGGGGATGTATGTTTGGTGAAATTGAGGTTTCTGCTGAAGTTTTAGGGGATAATGTGATAAGGTGCCAGACTCCTATGCATTCATCTGGTCATGTACCATTCTATGTTACCTGCAGTAATAGGTTAGCCTGCAGTGAGGTCAGGGAATTTCAGTTTGATGAACATCCAAACAAATGTTTAGGACCTTTGGGTGTTAAAATCTTACCAGAAATTAAGGTAAGACTTCAAATGCGACTTTTTAAACTAGTAGACTTGGGACCTGACAAAAAGTGGTTGAAGTGCTCTGTTTCTGATTGTGAAAAATGTAAACTCAAGGGAATAATGTATTCCATGAGAGATGATAGCGGAATATTTGAAGAAACTTTCCAGATTGATGGAATTGATCATATAAACCCTAGAGATGTATTATTTCAGAGATTAATGAGAGACAAGCTTTATGAGTGGTTGATATACAAGGTTCATGAAGGAGGAAAAGGATCACATGTGTTGGATGATGAGGGCCAAGGAGTAATACATTTGGCAGCTGCACTTGGTTATGTGTGGGCTATGGCTCCATTAGTTGCTGCTGGTATCAATCCTAACTTTAGAGACAATCGTGGAAGATCAGGACTTCACTGGGCATCGTATTTTGGGAGAGAAGAAACTGTTATTGTGCTAGTCAAATTAGGTGCAGCCCCAGGTGCTCTTGAGGATCCAACATCAGCATTTCCTCGAGGTCAAACAGCAGCTGATTTAGCTTCAAGTAGAGGACATAAAGGCATTGCTGGGTATTTGGCTGAGGCAGATCTGACTAATCAATTATCTGTATTGACTGTCCAGGAAAATGAGACTAGCAACATTGCCACAACCATAGCAGCTGACAGTGCTTTTCAATCTTGTGAAGATGACTCATCTAATTTGACAATGGATGAGCAACATCATCTCAAAGAGTCTCTTGCTGTGTTTCGAAAATCAGCTCAGACAGCTGCTTCAATCCTAGCAGCCTTTAGAGCAAGGTCATTCTGTCAGAGACAATTAGCCAAAAGTAGCTGCGTTATTTCGGATGCAGTACTTGACATAGTTGTTGATTCTTTGAGCAAGGTACAGAAGATGGGTCACTTTGAGGATTATTTACATTATGCAGCTTTAAAGATTCAGAAGAGATATCGTGGATGGAAAGGAAGAAAGGATTTTTTAAAGATACGCAGCCGCATTGTAAAAATCCAGGGTCATATTAGAGGACACCAAGTTCGTAAGCAATACAAAAAACTTGTGTGGTCTGTTAGCATTGTGGAAAAGGTAATTCTTCGATGGAGACGGAAAGGAACTGGTCTGCGTGGATTTCGGGTTGGGCAGCCACCAGTTGGCATTGATGAGTATGATTTTCTGAGCATTGGCAGGAGACAGAAATCAGATGATGTAAAAAAAGCTCTCCAGAGAGTCAAATCCATGATTCGTAACCCAGAGGCAAGGGAACAGGTTGAACAGGCATTTAATACCCGCAAACGAAAATTCAAACTTACTATTAGTTGA 3027 0.4057 MAETAKYIPNSQLELEEILQEAEHRWLRPVEICEILRNYKKFKLTPDPPIRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTIREAHEKLKAGSVDVLHCYYAHGEDNESFQRRSYWMLDDVSGRSQSEQASTGQLEHVVLVHYRETKESCNSSISNLPVVPVTLVGRSQNSSVLSSCKINTPISVVQKSFTSSANKHGYSSEYEHVNSKDGPQASSHAQPVSNSIIHSASWHTHEVAGFCELLRNPLISTWSSTIPSYSPGTVLSPWTSIQNSSRDIIYMHDGKHHVDGSVDGLEADFTVHKLNSAKLDAVNRMQDGVIFGDRLVTGMYIQPVEDLLTVNQASACFKCNLVHVVQNEHDLDTFHAQLYDHPVVANTKTIVEQKLKDGGLDNDESERVESGEMKKLDSFGRWMDKEIGGDCDNSLMASDSGNYWSTIDAHNEDKEVSSLRHTQLDMDSLGPSLSQEQLFSIHDFSPDWAYTGVRTKVLIVGTFLGSKKLSSETKWGCMFGEIEVSAEVLGDNVIRCQTPMHSSGHVPFYVTCSNRLACSEVREFQFDEHPNKCLGPLGVKILPEIKVRLQMRLFKLVDLGPDKKWLKCSVSDCEKCKLKGIMYSMRDDSGIFEETFQIDGIDHINPRDVLFQRLMRDKLYEWLIYKVHEGGKGSHVLDDEGQGVIHLAAALGYVWAMAPLVAAGINPNFRDNRGRSGLHWASYFGREETVIVLVKLGAAPGALEDPTSAFPRGQTAADLASSRGHKGIAGYLAEADLTNQLSVLTVQENETSNIATTIAADSAFQSCEDDSSNLTMDEQHHLKESLAVFRKSAQTAASILAAFRARSFCQRQLAKSSCVISDAVLDIVVDSLSKVQKMGHFEDYLHYAALKIQKRYRGWKGRKDFLKIRSRIVKIQGHIRGHQVRKQYKKLVWSVSIVEKVILRWRRKGTGLRGFRVGQPPVGIDEYDFLSIGRRQKSDDVKKALQRVKSMIRNPEAREQVEQAFNTRKRKFKLTIS 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02887 1008 Gene3D Immunoglobulins 465 564 IPR013783 -
Spst3g02887 1008 SMART CG_1_2 18 149 IPR005559 GO:0003677
Spst3g02887 1008 SMART ANK_2a 743 773 IPR002110 GO:0005515
Spst3g02887 1008 SMART ANK_2a 671 700 IPR002110 GO:0005515
Spst3g02887 1008 SMART ANK_2a 704 733 IPR002110 GO:0005515
Spst3g02887 1008 Gene3D - 879 924 - -
Spst3g02887 1008 ProSiteProfiles CG-1 DNA-binding domain profile. 15 154 IPR005559 GO:0003677
Spst3g02887 1008 FunFam Calmodulin-binding transcription activator 2 875 923 - -
Spst3g02887 1008 FunFam Calmodulin-binding transcription activator 2 465 562 - -
Spst3g02887 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 870 927 IPR027417 -
Spst3g02887 1008 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 997 - -
Spst3g02887 1008 SMART iq_5 875 897 IPR000048 GO:0005515
Spst3g02887 1008 SMART iq_5 898 920 IPR000048 GO:0005515
Spst3g02887 1008 CDD IPT_PCSR 471 530 - -
Spst3g02887 1008 ProSiteProfiles Ankyrin repeat profile. 704 736 IPR002110 GO:0005515
Spst3g02887 1008 SUPERFAMILY E set domains 472 557 IPR014756 -
Spst3g02887 1008 Pfam IQ calmodulin-binding motif 901 920 IPR000048 GO:0005515
Spst3g02887 1008 Pfam IQ calmodulin-binding motif 879 896 IPR000048 GO:0005515
Spst3g02887 1008 Gene3D - 649 878 IPR036770 -
Spst3g02887 1008 ProSiteProfiles IQ motif profile. 876 905 IPR000048 GO:0005515
Spst3g02887 1008 MobiDBLite consensus disorder prediction 203 222 - -
Spst3g02887 1008 ProSiteProfiles IQ motif profile. 899 927 IPR000048 GO:0005515
Spst3g02887 1008 Pfam IPT/TIG domain 472 550 IPR002909 -
Spst3g02887 1008 Pfam CG-1 domain 21 146 IPR005559 GO:0003677
Spst3g02887 1008 SUPERFAMILY Ankyrin repeat 661 766 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02887 Spst-Chr3 78373403 78381581 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02887 59 997 CAMTA Transcription Factor Family AT2G22300 35.231 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Spst3g02887 CG-1 1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02887 K21596 - gmx:100818336 1625.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02887 3 78373403 78381581 Spst3g02887 3 78373403 78381581 ECH