Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02878 ATGGCGGCTGAGTTTGGGGGGAAGAATCAGTACTTGTGTAGACCTGTGGTAATGAAGAAAGCTGTTGGGAATGGGAAGAAGAGTTTGGAATGGGATTTGAATGATTGGAAATGGGATGGTGATCTTTTCACTGCTCAACCACTCAATTCAGTGCCATCAGATTGTAGGAGTCGCCAGTTTTTCCCTCCTCATCCTGAAATTCCTGCAAAAAATGCTAATCTTTCTACCAATTTGTCTTCTTCTGTATTCAACCCAAGTGTGGGAAAGAGGGAATTGGAGAAAAGGAGGAGGGGTGCTATAGAGGAAGGTGAAGGGGAGGGGCTGAACGATGAGGGTGGTTCTCTTAGTTTGAACCTTGGGGGTCAAGGTTACCCTTTCATGGTGGAAGGAGAGGAAAAAAGTGGAAAAAAGACAAAGGTAATTGGGACTACTACTGTTGCTGCTACCACCTCTAACCGTGCTGTTTGTCAGGTGCAAGATTGTAGGGCTGATCTTAGTAATGCCAAGGATTACCACCGTCGGCACAAGGTTTGTGATGTTCATTCTAAGGCCACCATGGCGCTAGTGGGAAATGTTATGCAACGTTTCTGTCAACAGTGTAGCAGGTTTCATGTCCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGTTTGGCAGGTCATAACAGGAGGAGGAGGAAAACTCATCCTGATGTTACTGCTGTTAATGAAGGCTCTCTTAACGATGAAAGGGGCAGTAGCTATCTGTTGATGAGTCTTTTACGGATGCTGACCAATTTGCATACAATTGGCTCGGATCATACAAGGAACCAGGATATTCTCTCCCATCTTCTGAGGAACCTGGCAAGCCTGGCTGCTCCAAACAATGGTACAAGTTTATCCACCTTATTGGAGGACACTAAAGGTCTGGTAAATTCTGGGACACCTGGAGCAACTCATGATAAACCCAACCTTAACGCAAACTGTCCTGAAGCTTCCAGGCCTTCTGGTTCTTCCATCAAGATTGATAATGGCTTCTTCAGTCAGGACCCTTCTATGGCACTGTATGAAACAGTGCCTTCTAATGGTGGGACACAAAAATGTATACCTCCAGGTGATGGGGGAGTAGGAAATTCAAAACCACCTCCAGGAGCACTGTTTTCAAGTATAAGTCAATCAAGGGGAAGTCTTCCATCCCAATTAGTTTCAGTGGAGACTGCACTTGGAAGGGGCAACTTAAATACCATTGACCTGAATAATGTATTCAATGATACGCAGAACACTGTTGAGAATCATAAGAAGCCCTATCCTCATGTGGCATCAGAGATGGGATCTATTGATCTTCCCTCATGGTTGCAATGTGATTCTCTCAAATCAAGTCCTCCACAGACAAGCAGAAACTCAGATTCAACCTCTAACCAATCACCATCTAGTTCCAGCGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTTAAACTCTTTGGCAAGGATCCAAATGATTTTCCCCTTCTTCTCCGGTCACAGATTCTCAACTGGTTATCCCGCAGTCCCACAGAGATAGAGAGCTATATAAGGCCAGGTTGTATCATATTAACAATATATCTTCGTCTTGAAAAATCTGCATGGGAGGAGCTTTACTGTAATCTAGGGTCCAGCTTGAGAAAGCTTCTTGCTGCATCAAATGATACATTTTGGAGAACAGGATGGGTATTTGCAAGGGTGCAGCACTCTGTGGCTTTTCTGTATAACGGTCAGGTAGTCTTAGACGTGCCCTGGTGTCTCAAAAGCCCGCAACATTGTACGATTTCATGCATTAAACCACTTGCTGTTCCTGCAAGTGCTAGTGCTCACTTTATTGTCAAAGGTTGCAACCTTTCCCAGTCTAGCACAAGGTTGCTGTGTGCAATTGAAGGGAAGTATCTGGTACATGCTAGTTGTCATGATTTAATTGGTGGCGCTGATGAATCCATTCAGCATCTCAACTTCTCTTGTCATATACCAAATGTAACTGGGAGGGGTTTTATTGAGGTGGAAGACAATGGTCTTAGCAGTAGTTCCTTTCCATTTATAGTTGCTGAGCAAGAAGTTTGTTCAGAGATCTGCAAGCTGGAGAATGTGATTGAGGGTGCTGAAACCACTGGTGACATCCAGATTAAAAACCAACAAATGAAAGAAAAGACTGAAGCTCTTCATTTCTTGCAAGAAATGGGTTGGCTTCTTCATAGAAGTCGTGTGAAAGTTAGGCTAAGTCCAATGGCTCCTATCCATGCTCTCTTCCATTTTAATCGGTTCACGTGGCTTGTTGACTTCTCCATGGACCATGGCTGGTGTGCTGTGATGAAAAACCTGTTGGATATTATATTCGAGGGCGGTGTTGATGCAGGAGAGCATCCCTCCATTGAGCTTGCATTGTTAGACCTGAGTCTTCTTCACAAAGCTGTGAAGAGAAACAGTAGGCCTATGGTAGAATTACTGTTAAGATTTGTGCCAGTTAAAACCTCAGATGGTGCAGACAGTGAAGCGAAGCAAGTTGAAAAAGCCACTGACAGATTATTGTTTAGACCTGATACTGTTGGGCCAGCTGGCTTGACTCCTCTTCATGTGGCAGCAAGTATGAGTGGCTCGGAGAACGTGTTGGATGCATTAACTGATGATCCAGGAATGGTAGGAATTGAAGCATGGAAAAGTGCCCAAGACAGTACAGGTTTGACCCCCAACGACTATGCATGCCTTAGGGGCTTTTACTCTTACATTCAACTTGTCCAGAAGAAGATCGACAAAAAGGATGAGAAACAACATGTGGTTGATATTCCTGGCACTGTTGTAAACAGTGTTAACACAAAGCAGAAGCTATCAGATGAACTTAGGACAGGTAAAGTTTTAAGTTTACAGACTGAGAAGATTGAAACCATAAAAATGGCAAGTCAATGCAGTGTATGCCAGCAGAAGTTGGCTTATGGTGGCAGGAGAAAAGCAGTGGTTTATAGGCCAGTCTTGCTCTCCATGGTGGCCATAGCAGCCGTGTGTGTCTGTGTGGCTTTGCTCTTCAAAAGCTCACCTAGAGTTTATTATGTCTTCCAGCCTTTCAACTGGGAATCACTGAAGTATGGGGTAATATAA 3108 0.4411 MAAEFGGKNQYLCRPVVMKKAVGNGKKSLEWDLNDWKWDGDLFTAQPLNSVPSDCRSRQFFPPHPEIPAKNANLSTNLSSSVFNPSVGKRELEKRRRGAIEEGEGEGLNDEGGSLSLNLGGQGYPFMVEGEEKSGKKTKVIGTTTVAATTSNRAVCQVQDCRADLSNAKDYHRRHKVCDVHSKATMALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPDVTAVNEGSLNDERGSSYLLMSLLRMLTNLHTIGSDHTRNQDILSHLLRNLASLAAPNNGTSLSTLLEDTKGLVNSGTPGATHDKPNLNANCPEASRPSGSSIKIDNGFFSQDPSMALYETVPSNGGTQKCIPPGDGGVGNSKPPPGALFSSISQSRGSLPSQLVSVETALGRGNLNTIDLNNVFNDTQNTVENHKKPYPHVASEMGSIDLPSWLQCDSLKSSPPQTSRNSDSTSNQSPSSSSGEAQSRTDRIVFKLFGKDPNDFPLLLRSQILNWLSRSPTEIESYIRPGCIILTIYLRLEKSAWEELYCNLGSSLRKLLAASNDTFWRTGWVFARVQHSVAFLYNGQVVLDVPWCLKSPQHCTISCIKPLAVPASASAHFIVKGCNLSQSSTRLLCAIEGKYLVHASCHDLIGGADESIQHLNFSCHIPNVTGRGFIEVEDNGLSSSSFPFIVAEQEVCSEICKLENVIEGAETTGDIQIKNQQMKEKTEALHFLQEMGWLLHRSRVKVRLSPMAPIHALFHFNRFTWLVDFSMDHGWCAVMKNLLDIIFEGGVDAGEHPSIELALLDLSLLHKAVKRNSRPMVELLLRFVPVKTSDGADSEAKQVEKATDRLLFRPDTVGPAGLTPLHVAASMSGSENVLDALTDDPGMVGIEAWKSAQDSTGLTPNDYACLRGFYSYIQLVQKKIDKKDEKQHVVDIPGTVVNSVNTKQKLSDELRTGKVLSLQTEKIETIKMASQCSVCQQKLAYGGRRKAVVYRPVLLSMVAIAAVCVCVALLFKSSPRVYYVFQPFNWESLKYGVI 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02878 1035 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 114 917 IPR044817 GO:0003677
Spst3g02878 1035 MobiDBLite consensus disorder prediction 86 113 - -
Spst3g02878 1035 SUPERFAMILY SBT domain 154 235 IPR036893 GO:0003677|GO:0005634
Spst3g02878 1035 Gene3D - 790 939 IPR036770 -
Spst3g02878 1035 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Spst3g02878 1035 Gene3D - 147 217 IPR036893 GO:0003677|GO:0005634
Spst3g02878 1035 MobiDBLite consensus disorder prediction 452 480 - -
Spst3g02878 1035 SMART ANK_2a 897 926 IPR002110 GO:0005515
Spst3g02878 1035 SMART ANK_2a 857 887 IPR002110 GO:0005515
Spst3g02878 1035 SMART ANK_2a 801 830 IPR002110 GO:0005515
Spst3g02878 1035 SUPERFAMILY Ankyrin repeat 802 919 IPR036770 -
Spst3g02878 1035 MobiDBLite consensus disorder prediction 368 388 - -
Spst3g02878 1035 MobiDBLite consensus disorder prediction 88 104 - -
Spst3g02878 1035 FunFam Squamosa promoter-binding-like protein 14 147 217 - -
Spst3g02878 1035 Pfam SBP domain 156 229 IPR004333 GO:0003677
Spst3g02878 1035 MobiDBLite consensus disorder prediction 221 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02878 Spst-Chr3 78281366 78287481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02878 24 1034 SBP-box Gene Family AT3G60030 46.453 0.0 783
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Spst3g02878 SBP 8.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02878 - - gsj:114419913 1616.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02878 3 78281366 78287481 Spst3g02878 3 78281366 78287481 ECH
Spst3g02878 3 78281366 78287481 Spst9g02747 9 61666985 61677318 PCT