Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02862 ATGGCACAGGATATTGACTTGAATGGAGATCCTAACAGCAAGCAACACTCCAAGAAGAGGAAGGAGGCCAATGAACCCGCTAAAACAGTACCCCTGTACAAGCTTTTCTCATTTGCTGATCCTTTGGATCATTTATTGATGCTTTTGGGGACTGTTGGTGCTGTTGGGAATGGAATCTCCTTGCCCTTGATGACTCTGATATTCGGAAATATGATCAATGCATTTGGAGGTACCAATAACTCCAAAGAAGTTGTTGATGAAGTTTCCAAGGTGTCTCTGAAATTTGTATACTTGGGTGTCGGTACCTTTTTCGCGTCACTTTTGCAGTTGACTTGCTGGATGATCACTGGAGAGAGACAAGCTGCAAGAATTAGAGGCTTATACCTTCAAGCTATTTTGAGGCAAGATGTCACCTTCTTTGATAAGGAAACTAGAACCGGAGAGGTTGTTGGAAGGATGTCAGGTGACACTGTTCTTATTCAAGAGGCCATGGGTGAGAAGGTAGGACAGTTCTTGCAGTTCATGGCAACTTTCGTTGGAGGTTTTGTGATAGCATTTATCAGGGGATGGCTTCTAGCGGTTGTCATGCTATCTACTATTCCACCTCTTGCTTTCTGTGGTGCTATGGTAGGCCTGGTTATTTCAAAAGCATCATCCAGGGGACAAGAAGCTTATTCTGTAGCAGCAACTGTAGTAGAGCAGACAATTGGATTTATCAGAACTGTTGCTTCATTCACTGGGGAGAAGCAAGCTATAGCTAAATATAACCAGTCCTTAATCAAAGCTTACAAGGCTGGATTGCAAGAAGCACTAGCTTCTGGTTTTGGGTTTGGTTCTCTCTATTTTGTTTTTACCAGCAGTTATGGTTTGGCTATATGGTTTGGTGCAAAAATGATAATAGAGAAAGGGTATACAGGAGGAGAGGTTGTGACAGTAATGATGGCTGTATTGACTGGCTCCATGTCTCTAGGGCAGGCATCTCCCAGCTTGAGCGCTTTCGCTGCTGGAAAAGCTGCTGCCTTTAAGATGTTTGAAACGATTAAGAGAAAGCCAGAAATTGATACTTATGACACTACGGGTCAGCAGCTTGATGACATTCGTGGAGATATCGAGTTTAGGGAGGTTTGCTTTAGTTATCCTACAAGACCAGATGAATTGATCTTCAATGGATTTTCTCTTTCAATACCAAGTGGCACTACGACAGCTTTGGTAGGGGAAAGTGGGAGTGGGAAATCTACAGTTGTTAGTTTGATAGAGAGATTTTATGATCCACAAACGGGTGAAGTTCTCATTGACAGCATCAATCTCAAAGAGTTTCAACTGAAGTGGATCAGACAGAAAATAGGCCTCGTTAGCCAGGAACCAGTTCTCTTTACTTGCAGTATTAAAGATAATATTGCCTATGGCAAGGATGGTGCAACTGATGAGGAAATCAGAGCTGCAGCAGAAGTAGCCAATGCTGCAAAATTTATAGATAAACTTCCTCAGGGAGTAGACACATTGGTTGGTGAGCACGGAACTCAACTATCTGGGGGTCAAAAGCAGAGAGTTGCAATAGCAAGAGCAATTTTGAAAGATCCAAGAGTCCTACTTCTGGATGAAGCTACTAGTGCTCTTGATGCTGAATCTGAGAAAATTGTGCAGGAGGCATTGGACAGAATAATGATAAACAGAACAACTGTCATTGTTGCTCACCGCTTGAGTACTATAAGGAATGCTGATAGCATTGCTGTTATTCATCGAGGAAAAATAGTTGAAAGAGGTTCACATGCTGAGCTTACCAAGGATCCTAATGGAGCCTATAGCCAGCTCATTAGACTTCAAGAAATTAAAGGATCAGAACAAAAGGCTCAAAATGACAGAGACAAGCTAGAAAGTATAGTGCATTCTGGAAGACAATCAAGTCAAAGATCTATAAGCCAAAGGTCTTCAGGAGATGGAAGCAGTGGTCGTAACTCATTCTCAGCATCTCTTGGTGTGCCAGTATCAGTTGGCTTCTTGGAACCTGCAAGTGGAGAACCTCTAACACCTCCTTCAACTTCACCACCGGAAGTGCCACTCTACCGCCTGGCATATTTAAACAAGCCAGAGATTCTAGTCTTACTGGCAGGGACCGTAACTGCAGTAGTAAATGGAGTTTTATTACCCGTTATTGCAATCTTTATATCCAAAATGATAAGTATTTTCTATGAGCCAGCTCATGAACTCCGTAAAGATTCAAAACTCTGGGCGTTGCTATTTGTTGCACTTGGTTTGGTATCGCTAACCATGCTTCCATGTAGATTCTACCTTTTTGGTGTTGCTGGTGGTAAGTTGATAAAAAGGATTCGGAATATGTGTTTCGAGAAAGTAGTTCATATGGAAGTTAGCTGGTTCGACGAAGCTGAACATTCAAGTGGAGCAATTGGAGCAAGGCTCTCTTCTGATGCAGCTGCTGTTCGAGCTTTGGTTGGGGATGCACTTGGTTTGCTGGTTCAAAATATTGCTACAGCTGTCGGCAGTTTGGTAGTTGCTTTTGATGCATGCTGGCAGCTTGCTTTTATAGTGCTTGCTTTAGCACCTCTTTTAGGACTAAATGGATACGTGCAATTTAAGTTCTTGAAAGGATTCAGCAATGATACAAAGAAACTGTATGAGGAAGCAAGTCAAGTGGCAAATGATGCTGTAGGCAGTATAAGAACAGTTGCTTCATTCTGTGCTGAAAAGAAGGTGATGGAATTATACCAGGAAAAATGTGAAGGACCAATTAAGACAGGCATAAGGCGAGGGATAATAAGTGGAATTAGTTATGGGGTATCATTCTTCATGCTTTATGCAGTTTATGCATGCAGTTTTTATGCTGGAGCTCGACTAGTAGAGGATGGAAAATCAACATTCTCAGATGTTTTCCGTGTCTTTTTTGCATTCAGCATGGCAGCTCTGGGAATCTCTCAATCTAGCTCTTTGGTCCCTGATTCAACTAACTCAAAAAGTGCTGCGGCTTCTGTATTTGCTATTCTTGATCGAAAGTCACAAATTGACCCAAGTGATGACTCAGGTTGGACATTGGAAGAAGTGAAGGGAGAGATTGAATTTAACCATGTCAGTTTCAAGTATCCTACCAGACCTGATGTTCAAATATTCAGAGATCTTTGCTTGACTATTCATAGTGGCAAGACAGTTGCACTGGTTGGTGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTATTGCTGAGGTTTTATGATCCAGACTCAGGTCACATTACACTGGATGGAAAAGAAATCCAAAGGATGCAAGTTAAATGGCTAAGACAACAGATGGGCCTGGTGAGCCAAGAACCAGTGCTGTTTAATGACACCATCCGCGCCAATATTGCATATGGCAAGGGCGGGGATGCAACAGAGGCAGAAATTAGAGCTGCAGCAGAACTTGCAAATGCTCACAACTTCACTAGTAGTTTGCAGGAGGGTTATGACACAATAGTAGGGGAGAGAGGGATTCAACTATCTGGAGGGCAGAAGCAGCGGGTGGCAATTGCTCGAGCTATAGTGAAGAATCCAAAGATATTACTACTTGATGAAGCTACAAGTGCTCTTGATGCTGAGTCTGAAAAAGTGGTTCAGAATGCACTGGACCGTGTTATGGTGAACAGAACGACTATAGTAGTCGCTCATAGATTATCCACTATAAAGGGTGCGGATTTAATTGCAGTAGTTAAAAATGGTGTGATAGCAGAGAAGGGAAAACATGAAGCATTACTCAGAAAGGAAGGTGATTATGCTTCCTTAGTTGCATTGCATACAATTGGAGTGTTCAAGAAAGACAATTTAGAAGTGGTTGGAGCTGCATATGATATATATACAGCCAAGAATGTTACCACCACCAATCAAGCGTGCACAACAATTGAAAAGGCTTATGATCGTGCCTGCGATCAAGTTCCGCGGGTTGATGCGGACATCAATTTTAACGTTAGTGACTACGATGAGGATATAAAGCAGGTTATGAGTAATTTCACGAAGGACGAGTTTGTGCATATTCTACGTCGACAAAGCACTCGGTTTTTCAAGGGGAAGCTCCAAATACAGGGGAGTTACTCGCATAAGTGCGGGCGATGGGAAGCTCGTATGGGGCAGTTTCTGGGTAAAAATATTGTTGTTTCTGTTGCTGAATTTGAGGGTACAAGTTCTTTTGTGAAGGATACCCTATATAACTTAAAGGAAAAACTCGAAGCATGGACATCATTACTGAGAAACTCTTCTCATGTCGACGTTGAGGCACATCCTAGGCAGCTGCATAATTGGGTTGGGGGTCCTCCTAATCTCTATGATATAAGTGGAAGTGCACACTTCATAAATAAGTGTGACAATGGAATTGTTATTCACCGAAATCGGGATCCTGAAGCTGGGCCTATGGACCAAGTACAGGTATGTGTTCGAAAGAGTTTCATTATACTGGAGTACATGATCGGGGATTATGATGAAACTTATCGTAATCTCTTCACTCTTAGTGTGAATATAATGGATAGAGTTGGCTCTCTTGCAAAAGATTTTATCCTCATAAACCCTTCAGACTGTGCTACTCCAGTGAAGCACTCTAAACTAGAAAAGTTGAGGCAAGATGACAAGTGGGAACATGATTTCTTTAGCGATGGTGAATCACGGATCACTAATCGCAAAGTTAGAGCTCAAGATCTACACCTCAAGCTTCAAAGGAAAGGTCTTCAATCTGCATCTCAAAGCGGAAAGAGTTATGCTCCAAACATGCGTGTTCTCCGTGAAAGGCTAACAGGAACAATGACAGTACAACCTACAAATGTCGATCTGCCAAAATCAAAAGTTGTTAAACCAAGCAGTAAAAATGTTGGTGTTGAGGTCCCTGCAGGTACAGATCAAAAGGCCATGAAACAACAAATACAAGGAAAAATGCAGTCTTTGAAGAAAGATTAA 4929 0.4202 MAQDIDLNGDPNSKQHSKKRKEANEPAKTVPLYKLFSFADPLDHLLMLLGTVGAVGNGISLPLMTLIFGNMINAFGGTNNSKEVVDEVSKVSLKFVYLGVGTFFASLLQLTCWMITGERQAARIRGLYLQAILRQDVTFFDKETRTGEVVGRMSGDTVLIQEAMGEKVGQFLQFMATFVGGFVIAFIRGWLLAVVMLSTIPPLAFCGAMVGLVISKASSRGQEAYSVAATVVEQTIGFIRTVASFTGEKQAIAKYNQSLIKAYKAGLQEALASGFGFGSLYFVFTSSYGLAIWFGAKMIIEKGYTGGEVVTVMMAVLTGSMSLGQASPSLSAFAAGKAAAFKMFETIKRKPEIDTYDTTGQQLDDIRGDIEFREVCFSYPTRPDELIFNGFSLSIPSGTTTALVGESGSGKSTVVSLIERFYDPQTGEVLIDSINLKEFQLKWIRQKIGLVSQEPVLFTCSIKDNIAYGKDGATDEEIRAAAEVANAAKFIDKLPQGVDTLVGEHGTQLSGGQKQRVAIARAILKDPRVLLLDEATSALDAESEKIVQEALDRIMINRTTVIVAHRLSTIRNADSIAVIHRGKIVERGSHAELTKDPNGAYSQLIRLQEIKGSEQKAQNDRDKLESIVHSGRQSSQRSISQRSSGDGSSGRNSFSASLGVPVSVGFLEPASGEPLTPPSTSPPEVPLYRLAYLNKPEILVLLAGTVTAVVNGVLLPVIAIFISKMISIFYEPAHELRKDSKLWALLFVALGLVSLTMLPCRFYLFGVAGGKLIKRIRNMCFEKVVHMEVSWFDEAEHSSGAIGARLSSDAAAVRALVGDALGLLVQNIATAVGSLVVAFDACWQLAFIVLALAPLLGLNGYVQFKFLKGFSNDTKKLYEEASQVANDAVGSIRTVASFCAEKKVMELYQEKCEGPIKTGIRRGIISGISYGVSFFMLYAVYACSFYAGARLVEDGKSTFSDVFRVFFAFSMAALGISQSSSLVPDSTNSKSAAASVFAILDRKSQIDPSDDSGWTLEEVKGEIEFNHVSFKYPTRPDVQIFRDLCLTIHSGKTVALVGESGSGKSTVISLLLRFYDPDSGHITLDGKEIQRMQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIRAAAELANAHNFTSSLQEGYDTIVGERGIQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQNALDRVMVNRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLRKEGDYASLVALHTIGVFKKDNLEVVGAAYDIYTAKNVTTTNQACTTIEKAYDRACDQVPRVDADINFNVSDYDEDIKQVMSNFTKDEFVHILRRQSTRFFKGKLQIQGSYSHKCGRWEARMGQFLGKNIVVSVAEFEGTSSFVKDTLYNLKEKLEAWTSLLRNSSHVDVEAHPRQLHNWVGGPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPMDQVQVCVRKSFIILEYMIGDYDETYRNLFTLSVNIMDRVGSLAKDFILINPSDCATPVKHSKLEKLRQDDKWEHDFFSDGESRITNRKVRAQDLHLKLQRKGLQSASQSGKSYAPNMRVLRERLTGTMTVQPTNVDLPKSKVVKPSSKNVGVEVPAGTDQKAMKQQIQGKMQSLKKD 1642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02862 1642 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1023 1260 IPR003439 GO:0005524
Spst3g02862 1642 Gene3D ABC transporter type 1, transmembrane domain 93 997 IPR036640 GO:0005524|GO:0016020
Spst3g02862 1642 MobiDBLite consensus disorder prediction 1604 1642 - -
Spst3g02862 1642 FunFam ABC transporter B family member 9 34 366 - -
Spst3g02862 1642 MobiDBLite consensus disorder prediction 613 628 - -
Spst3g02862 1642 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 335 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst3g02862 1642 ProSitePatterns ABC transporters family signature. 509 523 IPR017871 GO:0005524|GO:0016887
Spst3g02862 1642 SUPERFAMILY ABC transporter transmembrane region 35 354 IPR036640 GO:0005524|GO:0016020
Spst3g02862 1642 MobiDBLite consensus disorder prediction 629 654 - -
Spst3g02862 1642 MobiDBLite consensus disorder prediction 612 654 - -
Spst3g02862 1642 MobiDBLite consensus disorder prediction 11 25 - -
Spst3g02862 1642 Pfam ABC transporter 1043 1191 IPR003439 GO:0005524
Spst3g02862 1642 SUPERFAMILY ABC transporter transmembrane region 689 1007 IPR036640 GO:0005524|GO:0016020
Spst3g02862 1642 Gene3D - 1013 1264 IPR027417 -
Spst3g02862 1642 CDD ABC_MTABC3_MDL1_MDL2 1023 1258 - -
Spst3g02862 1642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1012 1260 IPR027417 -
Spst3g02862 1642 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 370 606 IPR003439 GO:0005524
Spst3g02862 1642 CDD ABC_6TM_Pgp_ABCB1_D2_like 691 1006 - -
Spst3g02862 1642 Pfam ABC transporter transmembrane region 47 321 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst3g02862 1642 Pfam ABC transporter transmembrane region 702 973 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst3g02862 1642 PANTHER ABC TRANSPORTER B FAMILY 12 611 IPR039421 -
Spst3g02862 1642 CDD ABC_MTABC3_MDL1_MDL2 370 608 - -
Spst3g02862 1642 SMART AAA_5 1050 1243 IPR003593 GO:0016887
Spst3g02862 1642 SMART AAA_5 397 592 IPR003593 GO:0016887
Spst3g02862 1642 Pfam ABC transporter 389 537 IPR003439 GO:0005524
Spst3g02862 1642 CDD ABC_6TM_Pgp_ABCB1_D1_like 47 331 - -
Spst3g02862 1642 Gene3D - 368 621 IPR027417 -
Spst3g02862 1642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 608 IPR027417 -
Spst3g02862 1642 FunFam ABC transporter B family member 1 681 989 - -
Spst3g02862 1642 FunFam ABC transporter B family member 1 1013 1262 - -
Spst3g02862 1642 FunFam ABC transporter B family member 1 360 609 - -
Spst3g02862 1642 ProSitePatterns ABC transporters family signature. 1163 1177 IPR017871 GO:0005524|GO:0016887
Spst3g02862 1642 MobiDBLite consensus disorder prediction 1 25 - -
Spst3g02862 1642 FunFam ABC transporter B family member 9 990 1012 - -
Spst3g02862 1642 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 702 988 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst3g02862 1642 Coils Coil 607 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02862 Spst-Chr3 78163048 78173616 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02862 25 1261 Calmodulin-binding Proteins AT2G36910 45.671 0.0 1060
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02862 K05658 - gmx:102660078 2050.02