Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02861 ATGGCCGCTGAGGCCAGCTTGGATGCACATAAGACTTCAACTGAGATGAGAGGATCAACATCTGATCACCCACAAGTTCAAGGTCCTGAAAATACCCAAGAAATGGATGACAGGCAGGAGGATTTCAACAAGAGCAAGGTGAAGCATGAAAGCAATAAAACAGTACCCTTTTACAAACTTTTCTCATTTGCAGACGCCTGGGATTGTCTTCTCATGCTTGTTGGGGCAATAAGTGCTTTAGCTAATGGAATCGCTATGCCTTTAATGACTCTGCTAATTGGAGATGCGATTGATGCTTTCGGAGGAAATGCTGATAACAAACATGCAGTAGTTCATGAAGTATCCAGGGCATCTCTGATGTTCGTATCCATAGGCGTAGGTGCCTTTTTTGCAGCATTCTTCCAGGTGTCTTGCTGGGTGATCACTGGGGAGAGACAAGCTGCACGAATAAGAGGGCTATACCTCAAAGCAATTTTGAGGCAGGATATCAGCTTCTTTGACAAGGGAACCAACAGTGGAGAGGTTGTTGGAAGGATGTCAGGTGACACAGTTCTTATTCAGGAAGCCATGGGAGAGAAGGTAGGAAAATTCATCCAGTATGTAGCATGTTTTTTTGGAGGTATAGTCATAGCATTCATCAAGGGTTGGCTTCTAAGCCTTGTGCTACTATCTTCTCTTCCTCTTCTTGTCCTCTCTGGTTCCATAATGAGTTTTGCTTTTGCAAAGATGGCATCCCGAGGACAAGTAGCTTATTCTGAAGCAGCAACTGTAGTGGAGCGGACAATTGGTTCATTTCGAACTGTTGCATCATTTACTGGCGAGAAGCAAGCTATAGCTCAGTACAATAAATACTTAACTAAAGCTTACAGAGTTGGAGTGCAAGAAGGTTTGGCTGGTGGCTTTGGCTTTGGTTTAGTTCGTTTATTTGTTTACTGTACCTATGGTTTGACAATTTGGTTTGGAGGGAAGATGGTACTAGAGAAAGGTTATACGGGAGGACAAGTCATTAGTGTATTTTTTGCAGTTTTGACCGGTTCAATGTCTCTAGGGCAGGCATCTCCAAGCATAACTGCATTTGCCGCAGGACAAGCTGCTGCCTTTAAAATGTTTGAAACAATAAAGAGAGAGCCAGATATTGATGCTTATGACTCTTCTGGACAACAGCTAGATGATATATCAGGAGATATAGAACTTAGGGAGGTTTGCTTTAGTTATCCTTCAAGACGTGATGAACAGATATTCAATGGATTTTCAATTTCAATATCAAGTGGCACTACTGCAGCTTTAGTGGGGCAAAGTGGGAGTGGGAAATCAACTGTTATTAGTTTAATTGAGAGATTTTATGATCCACAAGCTGGTGAAGTTCTCATTGACAGTATCAACGTCAGAGAATTTCAATTGAAATGGATCAGACAGAAAATTGGCCTTGTCAGCCAGGAACCGGTTCTCTTTACTTGCAGCATTAAAGAGAATATTGCGTATGGTAAGGACGGGGCAACAGATGAAGAAATCAGAGCTGCAGCTGTACTTGCCAATGCTGCTAAATTCATAGATAAATTTCCACATGGACTTGACACAATGGTTGGAGAGCATGGAACCCAGCTCTCTGGAGGTCAGAAGCAAAGAATATGTATAGCAAGAGCAATTCTGAAGGACCCAAGAATTCTGCTCCTTGATGAAGCTACAAGTGCTCTTGATGCGGAATCTGAGAGAGTGGTGCAAGAGACACTTGACAGAATTATGATAAACCGAACAACTGTTATTGTGGCCCACCGCTTAAGTACAATAAGGAATGCTGATGTCATAGCAGTTATTCATCAAGGAAAAGTTATAGAAAAAGGTACACATACTGAGCTCACTAAAGATCCTGATGGAGCTTATAGTCAGCTCATTAGATTGCAAGAAATTAAAAGGGAGTCAGAACAGTATGATGCAAATTACTTAAGCAGACCAGAAGACATTGTAGATTCTGAACGACAATCGAGCCGGTTTTCTTTCCCTCAATCTTTAAGCCAGGGATCATCTGGAAGAAGAAACAGCAGTCAACACTCGTTCAGAATATCAAATCTGCTGCCTACCACACAAGATTTCTTTGATACATCAGAAGGAGGGTCTGGAGTTCTTCCTTCAGAAGCATCACATAAACATAAAGAAATTTCATTTCTCCGCATTGCTCATCTTAACAAACCTGAGATCCCATTGTTATTCATGGGGACACTAGCGGCAGCAGTGACAGGGGCAATACTGCCCATCGTGGGGCTCCTTCTCTCCCACATGATAAATACTTTCTTTGAGCCCGCAGATGAACTCCAAAAGGACTCAAAATTTTGGGCACTAATATTTGTTGCCCTTAGTGTGGGTGCCTTCATATTTCTTCCATTACGGTCCTACTTTTTTGGTGTAGCTGGCTCTAAGTTGATAAAAAGGATCCGTCTAAAGTGTTTTGAGAAAATAATTCACATGGAAGTAGGCTGGTTTGATAAAGTTGAAAATTCAAGTGGGGCACTTGGAGCAAGGCTGTCAACTGATGCAGCTTCTATTCGAACTTTGGTTGGGGATGCTCTTGGTTTACTGGTTCAAGATATTGCCACAGTAATTACAGCCTTGGCAATTGCCTTTGACGCAAACTGGCAACTTTCTCTTATAGTTCTTGTTTTGGTACCTCTAGTAGTTCTAAATGGACATCTGCAAATGAAGTCCATGCAAGGATTCAGCAAAGATGCAAAGAAGCTATACGAGGAAGCAAGTCAAGTAGCGAATGATGCTGTAGGGAATATCAGAACAGTTGCCGCTTTCTGTGCTGAAGAGAAGGTGATGAAATTATACCAGAAGAAATGTGCTGGACCAATCCAGGCAAGTATAAGGCAAGGCTTAGTCAGCGGAACAGGTTTTGGGTTATCACTGTTCTTTTTGTTCTCTGTTTATGCATGCAGTTTTTATGCTGGGGCAAAACTTGTCCAGAATGGCAAAACATCAATCTCAGACGTTTTCCGCGTATTTTTTTCTCTCTCGATGGCAGCTATAGCAATGTCACAATCTGGCTTCATGACCCCGGCTGCAAGTAAAGCAAAAAGTTCTGCTTCTTCTGTATTTGCTATCCTTGATCAGAAATCAAGAATAGATACCAGTGATGAGTCAGGAATAACATTGCAACAAGTGAAGGGAGAGATTGAGTTCCACCATGTCACCTTCAAGTATCCAACCAGGCCTAATGTTCTTGTATTCAATGATCTTTCATTGACCATTCACGCAGGAGAGACAGTTGCTCTAGTAGGAGAAAGTGGAAGTGGAAAGTCAACAGTGATTTCACTGTTACAAAGATTTTATGACCCAGATTCGGGTCAGATTACACTGGATGGAACAGAAATCCAAAAGCTACAACTTAAATGGTTTAGGCAGCAGATGGGTCTGGTAAGCCAGGAGCCGGTGTTGTTCAATGACACCATTCGAGCCAATATTGCATATGGAAAAGGTGGTAATGCAACAGAAGCTGAAATTATAGCTGCGGCAGAACTGGCAAATGCACACAAGTTCATTAGCAGTTTGCAGCAGGGATATGATACATTAGTGGGGGAGAGAGGGATTCAACTATCTGGAGGGCAGAAGCAGCGGGTAGCAATTGCGAGAGCCATAGTGAAAAGTCCAAAAATATTACTACTCGATGAAGCAACCAGTGCACTTGATGCTGAGTCTGAAAGAGTGGTCCAGGATGCCCTTGATCGAGTGAGGGTGGATAGAACCACAATTGTGGTGGCTCACAGGTTATCCACCATAAAGGATGCAGATTTAATTGCAGTGGTTAAAAATGGAGTCATTGCTGAGAAAGGAAATCACGACACCTTGCTCAACAAAGGTGGTACATATGATTCCTTAGTAGCACTGCATATTAGTGCTTCTTCGTCATAG 3906 0.4235 MAAEASLDAHKTSTEMRGSTSDHPQVQGPENTQEMDDRQEDFNKSKVKHESNKTVPFYKLFSFADAWDCLLMLVGAISALANGIAMPLMTLLIGDAIDAFGGNADNKHAVVHEVSRASLMFVSIGVGAFFAAFFQVSCWVITGERQAARIRGLYLKAILRQDISFFDKGTNSGEVVGRMSGDTVLIQEAMGEKVGKFIQYVACFFGGIVIAFIKGWLLSLVLLSSLPLLVLSGSIMSFAFAKMASRGQVAYSEAATVVERTIGSFRTVASFTGEKQAIAQYNKYLTKAYRVGVQEGLAGGFGFGLVRLFVYCTYGLTIWFGGKMVLEKGYTGGQVISVFFAVLTGSMSLGQASPSITAFAAGQAAAFKMFETIKREPDIDAYDSSGQQLDDISGDIELREVCFSYPSRRDEQIFNGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDSINVREFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAVLANAAKFIDKFPHGLDTMVGEHGTQLSGGQKQRICIARAILKDPRILLLDEATSALDAESERVVQETLDRIMINRTTVIVAHRLSTIRNADVIAVIHQGKVIEKGTHTELTKDPDGAYSQLIRLQEIKRESEQYDANYLSRPEDIVDSERQSSRFSFPQSLSQGSSGRRNSSQHSFRISNLLPTTQDFFDTSEGGSGVLPSEASHKHKEISFLRIAHLNKPEIPLLFMGTLAAAVTGAILPIVGLLLSHMINTFFEPADELQKDSKFWALIFVALSVGAFIFLPLRSYFFGVAGSKLIKRIRLKCFEKIIHMEVGWFDKVENSSGALGARLSTDAASIRTLVGDALGLLVQDIATVITALAIAFDANWQLSLIVLVLVPLVVLNGHLQMKSMQGFSKDAKKLYEEASQVANDAVGNIRTVAAFCAEEKVMKLYQKKCAGPIQASIRQGLVSGTGFGLSLFFLFSVYACSFYAGAKLVQNGKTSISDVFRVFFSLSMAAIAMSQSGFMTPAASKAKSSASSVFAILDQKSRIDTSDESGITLQQVKGEIEFHHVTFKYPTRPNVLVFNDLSLTIHAGETVALVGESGSGKSTVISLLQRFYDPDSGQITLDGTEIQKLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGNATEAEIIAAAELANAHKFISSLQQGYDTLVGERGIQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESERVVQDALDRVRVDRTTIVVAHRLSTIKDADLIAVVKNGVIAEKGNHDTLLNKGGTYDSLVALHISASSS 1301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02861 1301 FunFam ABC transporter B family member 1 715 1020 - -
Spst3g02861 1301 SUPERFAMILY ABC transporter transmembrane region 59 380 IPR036640 GO:0005524|GO:0016020
Spst3g02861 1301 Pfam ABC transporter transmembrane region 735 1005 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst3g02861 1301 Pfam ABC transporter transmembrane region 73 347 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst3g02861 1301 Pfam ABC transporter 415 563 IPR003439 GO:0005524
Spst3g02861 1301 PANTHER ABC TRANSPORTER B FAMILY 33 638 IPR039421 -
Spst3g02861 1301 FunFam ABC transporter B family member 9 59 392 - -
Spst3g02861 1301 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 387 634 IPR027417 -
Spst3g02861 1301 MobiDBLite consensus disorder prediction 658 683 - -
Spst3g02861 1301 MobiDBLite consensus disorder prediction 33 47 - -
Spst3g02861 1301 Gene3D - 1047 1299 IPR027417 -
Spst3g02861 1301 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 73 361 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst3g02861 1301 CDD ABC_MTABC3_MDL1_MDL2 1057 1292 - -
Spst3g02861 1301 FunFam Uncharacterized protein 1021 1047 - -
Spst3g02861 1301 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1057 1294 IPR003439 GO:0005524
Spst3g02861 1301 Pfam ABC transporter 1076 1225 IPR003439 GO:0005524
Spst3g02861 1301 SUPERFAMILY ABC transporter transmembrane region 723 1037 IPR036640 GO:0005524|GO:0016020
Spst3g02861 1301 ProSitePatterns ABC transporters family signature. 1197 1211 IPR017871 GO:0005524|GO:0016887
Spst3g02861 1301 CDD ABC_6TM_Pgp_ABCB1_D2_like 727 1040 - -
Spst3g02861 1301 MobiDBLite consensus disorder prediction 660 683 - -
Spst3g02861 1301 CDD ABC_MTABC3_MDL1_MDL2 396 634 - -
Spst3g02861 1301 ProSitePatterns ABC transporters family signature. 535 549 IPR017871 GO:0005524|GO:0016887
Spst3g02861 1301 MobiDBLite consensus disorder prediction 1 47 - -
Spst3g02861 1301 Gene3D - 394 647 IPR027417 -
Spst3g02861 1301 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1046 1294 IPR027417 -
Spst3g02861 1301 MobiDBLite consensus disorder prediction 12 32 - -
Spst3g02861 1301 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 736 1022 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst3g02861 1301 CDD ABC_6TM_Pgp_ABCB1_D1_like 72 357 - -
Spst3g02861 1301 Gene3D ABC transporter type 1, transmembrane domain 119 988 IPR036640 GO:0005524|GO:0016020
Spst3g02861 1301 SMART AAA_5 423 595 IPR003593 GO:0016887
Spst3g02861 1301 SMART AAA_5 1084 1277 IPR003593 GO:0016887
Spst3g02861 1301 FunFam ABC transporter B family member 1 1047 1296 - -
Spst3g02861 1301 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 396 632 IPR003439 GO:0005524
Spst3g02861 1301 FunFam ABC transporter B family member 1 386 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02861 Spst-Chr3 78142930 78148864 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02861 53 1295 Calmodulin-binding Proteins AT2G36910 43.725 0.0 1034
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02861 K05658 - gmx:100777713 2106.64