Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02859 ATGCAGGTTGCGTCATTTACAGGTGAGAAACAAGCTATAGCTCAATACAATCAATACTTGACTAAAGCTTACAGACTTGGAGTGCAAGAGGGTGTGGTTAGTGGTTTTGGCCTGGGTTCATTTCAATTACTTTCAATCTGCACTTACGCTTTGGCAATATGGTTTGGAGGGAAGATGGTACTAGAGAAAGGTTATACAGGAGGACAAGTCTTTAGTGTACTTTTGCCATTATTGTCTGGTTCCTCGCGTCTGGGGCAGGCATCTCCAAGCTTAACTGCATTTGCTGCAGGACAAGCTGCTGCGTTCAAAATGTTTGAAACAATAAATCGGAAGCCGGATATTGATGCTTATGACACTGGTTGTCGACAGGTAGATGACATTTCTGGAGATATAGAACTCAGGGAGGTCTGCTTTAGTTATCCATCCAGACCTGATGAACACATATTCAATGGATTTTCAATTTCAATATCAAGTGGCACTACTGCAGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCAACTGTTATTAGTTTAATTGAGAGATTTTATGATCCACAAGCTGGTGAAGTTCTCATTGACAGTATCAACCTCAGAGAATTTCAATTGAAATGGATCAGACAGAAAATTGGCCTTGTCAGCCAGGAACCAGCTCTCTTTACTTGCAGCATTAAAGAGAATATTGCGTATGGTAAGGTTGGGGCAACAGATGAAGAAATCAGAGCTGCAGCTGAACTTGCTAATGCTTCTAAGTTCATAGATAAATTTCCCCATGGACTTGATACGATGGTCGGCGAGCGTGGGACTCAACTTTCGGGAGGGCAAAAACAAAGAATATCAATAGCAAGAGCAATTCTGAAGGACCCAAGAATTCTTCTTCTTGATGAAGCTACGAGTTCTCTTGATGTAGAATCAGAGAGAGTGGTGCAAGAGACACTTGACAGTATTATGATAAACCGAACAAGTGTCATTGTAGCCCATCGCTTAAGCACAATCAGGAATGCTGATATGATTGCAGTTATTGATCAAGGAAAAGTAAAAGAAAAAGGCACATATGCTGAACTCACGGAAGATCCTAATGGAGCTTTTAGCCAGCTCATTAGATTGCAAGAAATCAAAAGGGAGTCAAAACAGGATGATTCAAACGACTCATGCTGGCCAGAAAACTTAGGTTCTCAACAACAATTGAGCCAACGATTTTCTATCTCTCAATCTTTAAGCCAGGGATCATCTGGAAGCGGAAACAATAGTGAACACTCTTTTAGAATATCTAATGCTATGCCAATCACACTGGACCTCTCTGAAACATTAAAAGGGCCTGATGTTCTTCCTTCAGCAGCATGGCATAAACCTCAAGAAGTTTCACTGGTCCGCATTGCTTATCTAAACAAACCAGAAATCATTGTGTTACTCATGGGGACTCTAGCAGCAGCAGCAACTGGTGCAATATTACCCACTATGGGACTTCTTGTTTCCCACATGATAAATACTTTCTTTGAGCCTGCAGATGATCTCCGGAAAGACTCCAAATTCTGGGCACTAATATTGGTTGCTCTTAGTGTGGGTGCCTTCATATTTATTCCATTAAGGTCCTACTTTTTTTCTGTAGCTGGTTCTAAGTTGATAAAAAGGATCCGGCTGATGTGTTTTGAGAAAATAATTAACATGGAAATAGGCTGGTTTGATAAAGCTGAAAATTCAAGTGGAGCACTTGGAGCAAGGCTGTCCACTGACGCAGCTTCTATTCGAACTTTGGTTGGGGATGCTCTTGGTTTGCTGGTTCAAGATATTGCTACTGCAATTACAGCTTTGGCGATTGCATTTGACGCAAACTGGCAGCTTTCTCTCATCATTCTTGCTTTGGTACCTCTAGTATTACTAAATGGATATGTGCAAATAAAGTCCATGCAAGGATTCCGCACCGATGCAAAGAAACTATATGAGGAAGCAAGTCAAGTAGCGAACGATGCAGTAGGAAATATCAGAACTGTTGCCGCTTTCTGTGCTGAAGAAAAGGTGATGGAGTTATACCAGAAGAAATGCGTAGGACCAATCCAGACAAGTATAAGACAAGGTTTAGTCAGCGGAACAGGTTTCGGTTTATCACTCTTCCTTCTGTTCTCAGTTTATGCATGCAGTTATTATGCTGGGGCAAGACTAGTTGAGAATGGCAAAGCATCATTCTCAGATGTTTTTCGCGTATTTTATGCTCTCATAATGGCAGCTATAGCAATGTCACACTCAAGCTTCATGACCCCAGCTGCTAGTAAAGCAAAAAGTTCTGTTGCTTCTGTATTTGCTATTCTTGATCAGAAATCAAGAATAGATCCCAGTGATGAGTCGGGAATGACATTGGAAGAAGTGAAGGGGAAGATTGAGTATCACCATGTCACTTTCAAGTATCCAACCAGGCCTGATGTTATTGTACTCAAAGATCTTTCCTTGATCATTAATGCAGGAGAGTTTGATTATACTGATGGAAATCAGACAGTTGCTCTAGTAGGTGAAAGTGGAAGTGGAAAGTCAACAGTGATCTCATTGTTAGAAAGATTTTATGAACCAGAGTCGGGTCAGATTACACTGGATGGAACAGAAATCCAAAAGCTACAACTTAAATGGTTCAGGCAGCAGATGGGTCTGGTAAGCCAGGAGCCTGTATTGTTCAATGACACCATTCGAGCCAATATTGCATATGGAAAAGGTGGTGATGCAACAGAAGCTGAAATTATAGCTGCAGCACAACTGGCAAATGCGCATAAGTTCATCAGCAGTTTGCAGCAGGGATATGATACATTAGTGGGGGAGAGAGGGATTCAACTATCTGGAGGGCAGAAGCAGCGCGTGGCAATTGCAAGAGCCATAGTTAAGAGTCCAAAAATATTATTGCTAGATGAAGCCACCAGTGCACTTGATGCTGAGTCTGAAAGAGTGGTACAGGATGCACTTGACCGAGTGAGTGTGGACAGAACCACTATTGTGGTGGCTCACAAGTTATCCACCATAAAGGATGCAGATTCAATTGTAGTGATTAAAAATGGAGTCATTGAAGAGAAAGGAAAGCACAAGACCTTGCTTAACAAAGGTGGTGCATATGCTTCTTTAGTAGCATTGCATATTAGTGTTACTTCATCGTAG 3132 0.416 MQVASFTGEKQAIAQYNQYLTKAYRLGVQEGVVSGFGLGSFQLLSICTYALAIWFGGKMVLEKGYTGGQVFSVLLPLLSGSSRLGQASPSLTAFAAGQAAAFKMFETINRKPDIDAYDTGCRQVDDISGDIELREVCFSYPSRPDEHIFNGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDSINLREFQLKWIRQKIGLVSQEPALFTCSIKENIAYGKVGATDEEIRAAAELANASKFIDKFPHGLDTMVGERGTQLSGGQKQRISIARAILKDPRILLLDEATSSLDVESERVVQETLDSIMINRTSVIVAHRLSTIRNADMIAVIDQGKVKEKGTYAELTEDPNGAFSQLIRLQEIKRESKQDDSNDSCWPENLGSQQQLSQRFSISQSLSQGSSGSGNNSEHSFRISNAMPITLDLSETLKGPDVLPSAAWHKPQEVSLVRIAYLNKPEIIVLLMGTLAAAATGAILPTMGLLVSHMINTFFEPADDLRKDSKFWALILVALSVGAFIFIPLRSYFFSVAGSKLIKRIRLMCFEKIINMEIGWFDKAENSSGALGARLSTDAASIRTLVGDALGLLVQDIATAITALAIAFDANWQLSLIILALVPLVLLNGYVQIKSMQGFRTDAKKLYEEASQVANDAVGNIRTVAAFCAEEKVMELYQKKCVGPIQTSIRQGLVSGTGFGLSLFLLFSVYACSYYAGARLVENGKASFSDVFRVFYALIMAAIAMSHSSFMTPAASKAKSSVASVFAILDQKSRIDPSDESGMTLEEVKGKIEYHHVTFKYPTRPDVIVLKDLSLIINAGEFDYTDGNQTVALVGESGSGKSTVISLLERFYEPESGQITLDGTEIQKLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAQLANAHKFISSLQQGYDTLVGERGIQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESERVVQDALDRVSVDRTTIVVAHKLSTIKDADSIVVIKNGVIEEKGKHKTLLNKGGAYASLVALHISVTSS 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02859 1043 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 131 367 IPR003439 GO:0005524
Spst3g02859 1043 FunFam ABC transporter B family member 1 121 370 - -
Spst3g02859 1043 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 791 1036 IPR003439 GO:0005524
Spst3g02859 1043 Pfam ABC transporter 827 967 IPR003439 GO:0005524
Spst3g02859 1043 Pfam ABC transporter transmembrane region 469 741 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst3g02859 1043 Pfam ABC transporter transmembrane region 3 81 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst3g02859 1043 FunFam ABC transporter B family member 1 449 754 - -
Spst3g02859 1043 CDD ABC_6TM_Pgp_ABCB1_D2_like 459 774 - -
Spst3g02859 1043 Gene3D ABC transporter type 1, transmembrane domain 3 382 IPR036640 GO:0005524|GO:0016020
Spst3g02859 1043 Gene3D - 789 1036 IPR027417 -
Spst3g02859 1043 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 470 756 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst3g02859 1043 PANTHER ABC TRANSPORTER B FAMILY 451 1036 IPR039421 -
Spst3g02859 1043 CDD ABC_MTABC3_MDL1_MDL2 791 1034 - -
Spst3g02859 1043 ProSitePatterns ABC transporters family signature. 270 284 IPR017871 GO:0005524|GO:0016887
Spst3g02859 1043 Gene3D ABC transporter type 1, transmembrane domain 688 788 IPR036640 GO:0005524|GO:0016020
Spst3g02859 1043 Gene3D ABC transporter type 1, transmembrane domain 439 594 IPR036640 GO:0005524|GO:0016020
Spst3g02859 1043 CDD ABC_MTABC3_MDL1_MDL2 131 369 - -
Spst3g02859 1043 FunFam ABC transporter B family member 1 781 1038 - -
Spst3g02859 1043 Pfam ABC transporter 150 298 IPR003439 GO:0005524
Spst3g02859 1043 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 96 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst3g02859 1043 SUPERFAMILY ABC transporter transmembrane region 458 775 IPR036640 GO:0005524|GO:0016020
Spst3g02859 1043 FunFam Uncharacterized protein 755 781 - -
Spst3g02859 1043 Gene3D - 121 370 IPR027417 -
Spst3g02859 1043 ProSitePatterns ABC transporters family signature. 939 953 IPR017871 GO:0005524|GO:0016887
Spst3g02859 1043 SMART AAA_5 826 1020 IPR003593 GO:0016887
Spst3g02859 1043 SMART AAA_5 158 330 IPR003593 GO:0016887
Spst3g02859 1043 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 780 1036 IPR027417 -
Spst3g02859 1043 SUPERFAMILY ABC transporter transmembrane region 3 115 IPR036640 GO:0005524|GO:0016020
Spst3g02859 1043 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 369 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02859 Spst-Chr3 78135864 78140076 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02859 3 1037 Calmodulin-binding Proteins AT2G36910 43.804 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02859 K05658 - gmx:100777713 1606.65