Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02858 ACACATGATGAACTCACTAAAGATCCTAATGGAGCATATAGCCAGCTCATTAGATTGCAAGAAATTAACAGGGAGTCAGAACAGCGGGATGCAAATGACTCAGGCCGGCCAGAAAACTTCATAGATTCTGAACAACAATTGAGCCAACAATTTTCCTTGCCTCAGTCCTTAAGCCATCGATCATCTGGAAGAGAAAACAATAGTCAGCACCCACTCAAAACATGTAATGCCACACTAGATGCTTTTCAAATATCAGAAGAAGGGCCTGAAGTTCTTCCGTCAGAAGCATTACATACGCCTCAAGAAGTTTCACTCATCCGCATTGCTAATCTTAATAAACCTGAAATCCCAGTGTTACTCATGGGGACTCTAGCAGCAGCAGCAACTGGTGCAATACTACCCACCATGGGGCTTCTTCTTTCTCACATGATAAATACTTTCTTTGAGGCTGCAGATGAAATTCGTAAAGATTCAAGGTTTTGGGCATTAATATTTGTTTCCCTTAGTGTGGCTGCCTTCATATGTGTTCCATTAAGGTCCTACTTTTTTGCTGTAGCTGGTGCTAAGTTGATAAAAAGGATCCGGCTAATGTGTTTTGAAAAAATAATTCACATGGAAATAGGCTGGTTTGATAAAGATGAAAATTCAAGTGGAGCACTTGGAGCAAGGCTGTCAACTGATGTAGTTTCTATTCGAACATTGGTTGGCGATGCTCTTGGCTTGCTGGTTCAGGATATTGCCACAACAATTACTGCCTTAGTAATAGCCTTTGAGGCAAACTGGCGGCTTTCTCTCATTATTGTTGTTTTAATTCCTCTAGTATTACTAAATGGATATGTGCAAATGAGGTCAATGCAAGGATTCCAAACTAATGCAAAGAAACTATTTGAGGAAGCAAGTCAAGTAGCGAATGATGCAGTAGGGAATATCAGAACAGTTGCTGCTTTTTGTGCTGAAGAGAAGGTGATGTTGTTATACCAGAAGAAATGTGTAGAACCGATCCAGACATGTATAAGGCAAGGTTTAGTCAATGGAACAGGTTTCGGTTTATCACTATTCTTTGTGTTTTCAGTTAACGCATGCAGTTTTTATGCTGGGGCAAGACTAGTTGAGAATGGGAAAGCATCATTCTCAGATGTTTTCCGTGTATTTTATGCTCTCGTAATGGCATCTGTAGCATTGTCACAATCAAGCTTCATGACCCCAGCTACTAGTAAAGCAAAAAGTTCTGTTGCTTCTGTATTTGCTATTCTTGATCAGAAATCAAGAATAGATCCCAGTGATGAGTCCGGAATTAAATTGGAAGAAGTGACGGGGAAGATTGAGTACCACCATGTCAGTTTCAAGTATCCAACCAGACCAAATGTTCTTGTGCTCAAAGATCTTTCCTTGACCATTCAAGCAGGAGAGACAGTTGCTCTAGTAGGTGAAAGTGGAAGTGGAAAGTCAACAGTGATCTCATTGTTACAAAGATTTTATGAACCTGCTTCGGGTCAGATTACACTGGATGGAACAGAAATCCAAAAGCTACAACTTAAATGGTTTAGGCAGCAGATGGGTCTGGTAAGCCAGGAGCCTATGTTATTTAATGACACCATTCGAGCCAATATTGCATATGGAAAAGGTGGAGATGCAACAGAAGCTGAAATTATAGCTGCAGCACAACTGGCAAATGCACACATGTTCATTAGCAGTTTGCAGCAGGGTTATGATACATTAGTGGGGGAGAGAGGGGTTCAACTTTCTGGAGGACAGAAGCAGCGCGTGGCAATTGCAAGAGCCATAGTGAAGAGTCCAAAAATATTATTGCTAGATGAAGCTACCAGTGCACTTGATGCAGGGTCTGAAAGAGTGGTACAAGATGCACTTGATCGAGTGAGTATGGACAGAACCACTATTGTGGTGGCTCACAGGTTATCCACCGTAAAGGATGCAGATTTAATTGCAGTGGTTAAAAATGGAGTCATTGAAGAGAAAGGAAAGCACGAGACTTTGCTTAGCAAAGGTGGTGCATATGCTTCCTTAGTAGCACTGCATATTAGTGTTGCTTCATCATAG 2058 0.4125 THDELTKDPNGAYSQLIRLQEINRESEQRDANDSGRPENFIDSEQQLSQQFSLPQSLSHRSSGRENNSQHPLKTCNATLDAFQISEEGPEVLPSEALHTPQEVSLIRIANLNKPEIPVLLMGTLAAAATGAILPTMGLLLSHMINTFFEAADEIRKDSRFWALIFVSLSVAAFICVPLRSYFFAVAGAKLIKRIRLMCFEKIIHMEIGWFDKDENSSGALGARLSTDVVSIRTLVGDALGLLVQDIATTITALVIAFEANWRLSLIIVVLIPLVLLNGYVQMRSMQGFQTNAKKLFEEASQVANDAVGNIRTVAAFCAEEKVMLLYQKKCVEPIQTCIRQGLVNGTGFGLSLFFVFSVNACSFYAGARLVENGKASFSDVFRVFYALVMASVALSQSSFMTPATSKAKSSVASVFAILDQKSRIDPSDESGIKLEEVTGKIEYHHVSFKYPTRPNVLVLKDLSLTIQAGETVALVGESGSGKSTVISLLQRFYEPASGQITLDGTEIQKLQLKWFRQQMGLVSQEPMLFNDTIRANIAYGKGGDATEAEIIAAAQLANAHMFISSLQQGYDTLVGERGVQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAGSERVVQDALDRVSMDRTTIVVAHRLSTVKDADLIAVVKNGVIEEKGKHETLLSKGGAYASLVALHISVASS 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02858 685 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 121 675 IPR039421 -
Spst3g02858 685 MobiDBLite consensus disorder prediction 38 72 - -
Spst3g02858 685 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 431 678 IPR027417 -
Spst3g02858 685 FunFam ABC transporter B family member 1 431 680 - -
Spst3g02858 685 Pfam ABC transporter transmembrane region 119 391 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst3g02858 685 SMART AAA_5 468 662 IPR003593 GO:0016887
Spst3g02858 685 Gene3D ABC transporter type 1, transmembrane domain 34 351 IPR036640 GO:0005524|GO:0016020
Spst3g02858 685 CDD ABC_MTABC3_MDL1_MDL2 441 676 - -
Spst3g02858 685 Gene3D ABC transporter type 1, transmembrane domain 403 430 IPR036640 GO:0005524|GO:0016020
Spst3g02858 685 Gene3D - 431 679 IPR027417 -
Spst3g02858 685 MobiDBLite consensus disorder prediction 22 72 - -
Spst3g02858 685 FunFam ABC transporter B family member 1 99 404 - -
Spst3g02858 685 Pfam ABC transporter 459 609 IPR003439 GO:0005524
Spst3g02858 685 CDD ABC_6TM_Pgp_ABCB1_D2_like 109 424 - -
Spst3g02858 685 Gene3D - 1 33 IPR027417 -
Spst3g02858 685 MobiDBLite consensus disorder prediction 22 37 - -
Spst3g02858 685 FunFam Uncharacterized protein 405 431 - -
Spst3g02858 685 SUPERFAMILY ABC transporter transmembrane region 107 425 IPR036640 GO:0005524|GO:0016020
Spst3g02858 685 ProSitePatterns ABC transporters family signature. 581 595 IPR017871 GO:0005524|GO:0016887
Spst3g02858 685 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 120 406 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst3g02858 685 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 441 678 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02858 Spst-Chr3 78096333 78099220 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02858 1 679 Calmodulin-binding Proteins AT2G36910 38.897 3.01e-154 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02858 K05658 - gmx:100777713 1043.11