Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02857 ATGACTTCAACTGAGATGAGAGGATCAACAAGGGATCATCCACCAGTTCAAGATACTGAAAACACCCAACAAGAAATGGTTGGCAGGCAGCAGGATTCCAAGAAAAAGAAGGTGAAGGATGAAAACAATAAAACTGTTCCCTTTCACAAGCTTTTCTCATTTGCACATCCTTGGGATTATTTTCTGATGCTTGTTGGGGCAATAAGTGCTGTTGCTAATGGAATCTCTACACCTTTATTGACTGTACTTGTTGGAGATACTATTGATGTTTTCGGAGATGTTGATAACAAACAAGTAGTTCATCAAGTTTCCAAGCTATCTCTGAAGTTCGCATACATCGGAGCAGGTTCCTTTCTGGCAGCATTCTTGCAGGTGTCTTGCTGGGTGATCAGTGGGGAGAGACAAGCTGCAAGAATAAGAGGGTTATACCTCAAAGCAATTTTGAGGCAAGATATCAGCTTCTTTGACAAGGAAACCACAAGTGGAGAAGTTGTTGGAACGATGTCAGGTGACACAGTTCTTATACAAGAAGCCATGGGAGAGAAGGTAGGAAAATTCATACAGCATGTGTCAAGTTTTTTAGGAGGCATGGTCATAGCCTTCACCAAGGGTTGGCTTCTAAGCCTTGTCCTGTCATCTTCTATTCCTCTTCTTGTCTTCTCCGGTTCTGCAATGAGCTTTGCTTTTGTAAACATGGCATCTCGAGGACAAACAGCTTATTCTGAAGCAGCAACGGTAGTGGAGCAGACAATTGGTTCAATTCAAACTGTTGCATCATTTACAGGTGAGAAACAAGCTATAACTCAATACAATAAATACTTAACTAAAGCTTACAGAATTGGAGTGCAAGAGGGTTTGGTTGGTGGTTTTGGCTTGGGTTCAATGAATTTATTTTCGACCTGCACCTATGGTTTGGCAATATGGTTTGGAGGGAAGATGGTACTAGAGAAAGGTTACACTGGAGGACAAGTCATCAGTGTATTTTTGTTAATAATGTCTGGTTCAATGCGTCTGGGGCAGACATCTCCAAGCATAACTGCATTTGCTGCAGGACAAGCCGCTGCCTTTAAAATGTTTGAAACAATAGAGAGGCAGCCGGATATTGATGCTTATGACACTGGTAGTCGACAGGTAGATGACATTTCTGGAGATATAGAACTCAGGGATGTCTGCTTTAGTTATCCATCCAGACCTGATGAACAGATATTCAATGGATTTTCAATTTCAATATCAAGTGGCACTACTGCAGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCAACTGTTATTAGTTTAATTGAGAGATTTTATGATCCACAAGCTGGTGAAGTTCTTATTGACGGTATAAACCTCAGAGAATTTCAATTGAAATGGATCAGACAGAAAATTGGCCTAGTTAGCCAGGAACCAGCTCTCTTTACTTGCAGCATTAAAGAGAATATTGCGTATGGTAAGGATGGGGCAACAGATGAAGAAATTAGAGCTGCAGCTGAACTTGCAAATGCTGCTAATTTCATAGATAAATTTCCCCATGGACTTGATACGATGGTCGGCGAGCGTGGAACTCAGCTTTCGGGAGGTCAGAAACAAAGAATATCGATAGCAAGAGCAATTTTGAAGGACCCAAGAATTCTTCTCCTTGATGAAGCTACGAGTGCTCTTGATGCAGAGTCAGAGAGAGTGGTGCAAGAGACATTGGACAGAATTATGATAAACCGAACCACTGTCATTGTAGCCCATCGCTTAAGCACAATCAGGAATGCTGATATGATTGCAGTTATTCATCAAGGAAAACTACAAGAAAAAGGCACATATGCTGAACTTGCTAAATATCCTGACGGAGCTTTTAGCCAGCTCATTAGATTACAAGAGATTAAAAGGGGGTCAAAAGAAGATGATGAAAACGATTCAGGCTGGGAAGAAAACATCATAGATTCTGAACAACAATTGAGCCAACGTTTTTCTTTCACTCCATCTTTAAGCAATCCATCATCTGGAAGAGAAAACAACAGTCATCACTCATTCAAAACATGTAATGCCAGGCCTATCACATTAGATCACTTTCAAGCATCAGAAGAAAGTTCTGAAGTTATTCCTTCAGAAGCATTGCAAAAGCCTCAAGAAGTTTCATTTCTCAGCATTGCTTATCTTAACAAACCTGAAATCCCAGTGTTACTCATGGGGACTCTAGCTGCAACAGCAACTGGCGCAATACTACCCACCGTGGGGCTTCTTCTTTCTCACATGATAAATACATTCTTTGAGCCTGCAGATGAACTCCGTAAAGATTCAAAGTTTTGGGCATTAATATTTCTTTACCTTAGTGTGGCTGCCTTCATATTTCTTCCATTACGGTCCTACTTTTTTGCTGTAGCTGGTGCTAAGTTGATAAAAAGGATCCGGCTGATGTGTTTTGACAAAATAATTCACATGGAAATAGGCTGGTTTGATAAAGATGAAAATTCAAGTGGAACACTTGGAGCAAGGCTGTCAACTGATGTAGCTTCTATTCGAACATTGGCTGGGGATGCTCTTGGTTTGCTGGTTCAGGATATTGCAACAACAATTACAGCCTTAGCAATTGCCTTTGAGGCAAACTGGCAGCTTTCTCTCATTGTTCTAGTTTTAGCACCTCTAGTATTACTAAATGGTTATGTGCAAATTAATGCAATGCAAGGACTCCACACTGATGCAAAGAAACTATATGAGGAAGCAAGTCAAGTAGCGAGTGATGCAGTGGGGAATATCAGAACTGTTGCCGCTTTCTGTGCTGAAGAGAAGGTGATGGAGTTATACCAGAAAAAATGTGTAGGACCAATCCAGACAAGTATAAAGCAAGGTTTAGTCAGCGGAACAGGTTTCGGTTTATCACTCTTCTTACTGTTTTCAGTTTACGCATGCAGTTTTTATGCTGGGGCAAGACTAGTTGAGAATGGCAAAGCATCATTCTCAGATGTTTTCCGTGTATTTTATGCTCTCATAATGGCAGCTATAGCAATGTCACAATCAAGCTTCATGACCCCAGCTGCTAGTAAAGCAAAAAGTTCTGTTGCTTCTGTATTTGCTCTTCTTGATCAGAAATCAAAAATAGATCCCAGTGATGAGTCCGGATTGACATTGGAAGAAGTGAAGGGGAAGATTGAGTACCACCATGTCACTTTTAAGTATCCAACCAGGCCTAATGTTATTGTACTCAAAGATCTTTCCCTGACCATTAATGCAGGAGAGTTTGATTATACTGATGGAAATCAGACAGTTGCTCTAGTAGGTGAAAGTGGAAGTGGAAAGTCAACAGTGATCTCATTGTTAGAAAGATTTTATGAACCAGATTCGGGTCAGATTACACTGGATGGAACAGAAATCAAAAAGCTACAACTTAAATGGTTTAGGCAGCAGATGGGTCTGGTGAGCCAGGAGCCTGTGTTGTTCAATGACACCATTCGAGCCAATATTGCATATGGAAAAGGTGGTGATGCAACAGAGGCTGAAATTATAGCTGCAGCAGAACTGGCAAATGCGCATAAGTTCATCAGCAGTTTGCAGCAGGGATATGATACATTAGTGGGGGAGAGAGGGATTCAACTATCTGGAGGGCAGAAACAGCGTGTGGCAATTGCGAGAGCCATAGTGAAAAGTCCAAAAGTATTACTGCTAGATGAAGCCACCAGTGCACTTGATGCTGAGTCTGAAAGAGTGGTCCAGGATGCAGTTGATCGAGTGAGTGTGGACAGAACTACTATTGTGGTGGCTCACAGGTTATCCACCATAAAGGATGCAGATTTAATTGCAGTGCTTAAGAATGGAGTCATTGAAGAGGAAGGAAAGCACGAAACTTTGCTTAACAAAGGTGGTATATATGCTTCCTTAGTAGCACTGCATATCAGTGCGTCTTCATCATAG 3900 0.4133 MTSTEMRGSTRDHPPVQDTENTQQEMVGRQQDSKKKKVKDENNKTVPFHKLFSFAHPWDYFLMLVGAISAVANGISTPLLTVLVGDTIDVFGDVDNKQVVHQVSKLSLKFAYIGAGSFLAAFLQVSCWVISGERQAARIRGLYLKAILRQDISFFDKETTSGEVVGTMSGDTVLIQEAMGEKVGKFIQHVSSFLGGMVIAFTKGWLLSLVLSSSIPLLVFSGSAMSFAFVNMASRGQTAYSEAATVVEQTIGSIQTVASFTGEKQAITQYNKYLTKAYRIGVQEGLVGGFGLGSMNLFSTCTYGLAIWFGGKMVLEKGYTGGQVISVFLLIMSGSMRLGQTSPSITAFAAGQAAAFKMFETIERQPDIDAYDTGSRQVDDISGDIELRDVCFSYPSRPDEQIFNGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLREFQLKWIRQKIGLVSQEPALFTCSIKENIAYGKDGATDEEIRAAAELANAANFIDKFPHGLDTMVGERGTQLSGGQKQRISIARAILKDPRILLLDEATSALDAESERVVQETLDRIMINRTTVIVAHRLSTIRNADMIAVIHQGKLQEKGTYAELAKYPDGAFSQLIRLQEIKRGSKEDDENDSGWEENIIDSEQQLSQRFSFTPSLSNPSSGRENNSHHSFKTCNARPITLDHFQASEESSEVIPSEALQKPQEVSFLSIAYLNKPEIPVLLMGTLAATATGAILPTVGLLLSHMINTFFEPADELRKDSKFWALIFLYLSVAAFIFLPLRSYFFAVAGAKLIKRIRLMCFDKIIHMEIGWFDKDENSSGTLGARLSTDVASIRTLAGDALGLLVQDIATTITALAIAFEANWQLSLIVLVLAPLVLLNGYVQINAMQGLHTDAKKLYEEASQVASDAVGNIRTVAAFCAEEKVMELYQKKCVGPIQTSIKQGLVSGTGFGLSLFLLFSVYACSFYAGARLVENGKASFSDVFRVFYALIMAAIAMSQSSFMTPAASKAKSSVASVFALLDQKSKIDPSDESGLTLEEVKGKIEYHHVTFKYPTRPNVIVLKDLSLTINAGEFDYTDGNQTVALVGESGSGKSTVISLLERFYEPDSGQITLDGTEIKKLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQQGYDTLVGERGIQLSGGQKQRVAIARAIVKSPKVLLLDEATSALDAESERVVQDAVDRVSVDRTTIVVAHRLSTIKDADLIAVLKNGVIEEEGKHETLLNKGGIYASLVALHISASSS 1299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02857 1299 ProSitePatterns ABC transporters family signature. 1195 1209 IPR017871 GO:0005524|GO:0016887
Spst3g02857 1299 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 726 1012 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst3g02857 1299 CDD ABC_MTABC3_MDL1_MDL2 385 623 - -
Spst3g02857 1299 MobiDBLite consensus disorder prediction 656 675 - -
Spst3g02857 1299 Gene3D - 1037 1297 IPR027417 -
Spst3g02857 1299 FunFam Uncharacterized protein 1011 1037 - -
Spst3g02857 1299 Gene3D - 375 624 IPR027417 -
Spst3g02857 1299 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1047 1292 IPR003439 GO:0005524
Spst3g02857 1299 FunFam ABC transporter B family member 1 705 1010 - -
Spst3g02857 1299 SMART AAA_5 1082 1276 IPR003593 GO:0016887
Spst3g02857 1299 SMART AAA_5 412 584 IPR003593 GO:0016887
Spst3g02857 1299 MobiDBLite consensus disorder prediction 1 28 - -
Spst3g02857 1299 FunFam ABC transporter B family member 9 50 381 - -
Spst3g02857 1299 CDD ABC_6TM_Pgp_ABCB1_D2_like 715 1030 - -
Spst3g02857 1299 PANTHER ABC TRANSPORTER B FAMILY 24 627 IPR039421 -
Spst3g02857 1299 SUPERFAMILY ABC transporter transmembrane region 717 1031 IPR036640 GO:0005524|GO:0016020
Spst3g02857 1299 Pfam ABC transporter 1083 1223 IPR003439 GO:0005524
Spst3g02857 1299 Pfam ABC transporter transmembrane region 64 336 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst3g02857 1299 Pfam ABC transporter transmembrane region 725 997 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst3g02857 1299 MobiDBLite consensus disorder prediction 1 41 - -
Spst3g02857 1299 FunFam ABC transporter B family member 1 1037 1294 - -
Spst3g02857 1299 Pfam ABC transporter 404 552 IPR003439 GO:0005524
Spst3g02857 1299 FunFam ABC transporter B family member 1 375 624 - -
Spst3g02857 1299 CDD ABC_MTABC3_MDL1_MDL2 1047 1290 - -
Spst3g02857 1299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1037 1292 IPR027417 -
Spst3g02857 1299 ProSitePatterns ABC transporters family signature. 524 538 IPR017871 GO:0005524|GO:0016887
Spst3g02857 1299 Gene3D ABC transporter type 1, transmembrane domain 688 1035 IPR036640 GO:0005524|GO:0016020
Spst3g02857 1299 Gene3D ABC transporter type 1, transmembrane domain 50 629 IPR036640 GO:0005524|GO:0016020
Spst3g02857 1299 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 64 350 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst3g02857 1299 CDD ABC_6TM_Pgp_ABCB1_D1_like 63 346 - -
Spst3g02857 1299 SUPERFAMILY ABC transporter transmembrane region 44 369 IPR036640 GO:0005524|GO:0016020
Spst3g02857 1299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 623 IPR027417 -
Spst3g02857 1299 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 385 621 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02857 Spst-Chr3 78084819 78090721 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02857 44 1293 Calmodulin-binding Proteins AT2G36910 42.063 0.0 994
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02857 K05658 - gmx:100777713 1969.51