Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02856 ATGATTCTTGGGACAATAAGCACTACTGGGAATCAAATAACCAAGGCTTCAACAAATATAGTCATGGGAGAAGCAATTGATGCTTTTAGAGGAAATGGTAACGCTAAACATGTAGTTTATGAAGTTTCCAAGGTGTCTCTGAAGTTTGCAATACTAGGTGTAGCTTTCTTTCTGGCAGCATTTTTACGAGCTATTCATGCATGCACTATTACAGAGGTGGCTTGTTGGGTGTCCAATGGGGAGAGGCAAGTAGCGAGAATAAGAGGCGTATACCTCAAAGCAATTTCGAGGCAAGATATCAGATTCTTTGACAAGGAAACCAATACTGGTGAGGTTGTTGGAAGGATGTCAGGTGACACAGTTCTTCTTATTCAAGAAGCCATGGGAGAGAGGGTATTAATGGACTACTCTTCAAGTCCCAAAGAGGTACAGTATAGCGTCAAGGGTTGGCTCCTAACTCTGGTTCTTCTATCTTGTATTCCACCTCTTGTTCTCTCCAACTCGATAATGAGCTTTACTTTCGCAAAGTTGGCATCCCGTGGACAAGCAGCTTATTCTGAAGCAGCACAAGCAGCAACGGTAGTAGATCGCACAATTGGTTTAATTCGAACTGATGAGAATCAAGTTATAGCTCAATACGATCAACCCTTAATCAAAGCTTACAGGACTGCAGTGCAAGACGGCATGGCTGCTGGCTTAGTGGTTCAAGATATTGCTACAGTAATTATAGCCTTCGCAATTGCCTTTGAGGCAAACTGGCAGCTTTCTCTCATCATTATTGTTTTGCTACCTCTATTATTAGTAAATGGACAACTGCAAATGGGCTCCATGCAAGGATTTGTCAGTGATGCAAAGGTTTGCAAATCCAAAGGTAAGTCCAATTCAAGTGGTTGGAATGATGTGGCAAGGAAAGGATATTGTCTCCTGTGTTTAATTAGTACTAACATCCATTTGATCAATGTTCAATGTGCTGTATATGTTGCAGTATGGAATATCAGAACAGTAGCTTCTTTCTGTGCAGAAGAGAAGGTGCTGGAGTTATACCAGAAGAAATGTTCAGGACCCATCCAGACAGGCATAAAGCAAGCTTTTATGCTGCAGCCCGACTTGTTGAGAATGGCAAAACATCAATCTCAGATTGATGTTTTCCGAGTATTTTTCACTCTCACAATGGCAGCAATAGCAATGTTACAATCTGGCTTCAGGGCCCCGGGTGCGAGCAAAGCAAAAAATTCTATGGCTTCTACATTTTCTATTCTTGAGCAGAAATCAAATATAGACCCCAGTGATGAGTCCGGAATGATGTTGCAAGAAGTGAGGGGAGAGATTGAGTTTCACCATGTCACTTTCAAGTACCCAACCAGGCTTAATGTGCTTGTGTTCAGATATCTCTCCTTCACCATTCATGCAGGAGAGGAAAACATGAGTCTTTTTAAACAAAATTATCTAGGTCTCTCTTTAGGGAGAATCTTAGAGTTTGATTATACTGATGGAAATCAGACAGTTGCTCTAGCTGGAGAAAGTGGAAGTGGAAAGTCAATAATAATCACATTGTTGCAAAGATTTTATGACCCAGAATCAGGTCAGATTACACTAGATGGATCAGAAATCCGAAATCTACAACTTAAACGGTTTAGGCAGCAGATGGGCCTGGTAAGCCAGGAACCAATATTGTTTAATGAATCCATCCGAGCAAATGCCCACACGTTCATTAGCAGTTTGCAACAGCTTGACAAACATTCGGGTTCAACCCATCTGAGGGATCACTCTCTGCTACAGAGAGCAGTCAAACTTGGTGCACAGATGATGGCCATTGTGACATTCACGTCATCTCACAAATCACTTACATTGAAGTTCTTATAA 1863 0.4149 MILGTISTTGNQITKASTNIVMGEAIDAFRGNGNAKHVVYEVSKVSLKFAILGVAFFLAAFLRAIHACTITEVACWVSNGERQVARIRGVYLKAISRQDIRFFDKETNTGEVVGRMSGDTVLLIQEAMGERVLMDYSSSPKEVQYSVKGWLLTLVLLSCIPPLVLSNSIMSFTFAKLASRGQAAYSEAAQAATVVDRTIGLIRTDENQVIAQYDQPLIKAYRTAVQDGMAAGLVVQDIATVIIAFAIAFEANWQLSLIIIVLLPLLLVNGQLQMGSMQGFVSDAKVCKSKGKSNSSGWNDVARKGYCLLCLISTNIHLINVQCAVYVAVWNIRTVASFCAEEKVLELYQKKCSGPIQTGIKQAFMLQPDLLRMAKHQSQIDVFRVFFTLTMAAIAMLQSGFRAPGASKAKNSMASTFSILEQKSNIDPSDESGMMLQEVRGEIEFHHVTFKYPTRLNVLVFRYLSFTIHAGEENMSLFKQNYLGLSLGRILEFDYTDGNQTVALAGESGSGKSIIITLLQRFYDPESGQITLDGSEIRNLQLKRFRQQMGLVSQEPILFNESIRANAHTFISSLQQLDKHSGSTHLRDHSLLQRAVKLGAQMMAIVTFTSSHKSLTLKFL 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02856 620 PANTHER ABC TRANSPORTER B FAMILY 232 472 IPR039421 -
Spst3g02856 620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 497 571 IPR027417 -
Spst3g02856 620 SUPERFAMILY ABC transporter transmembrane region 230 367 IPR036640 GO:0005524|GO:0016020
Spst3g02856 620 Gene3D ABC transporter type 1, transmembrane domain 374 432 IPR036640 GO:0005524|GO:0016020
Spst3g02856 620 Gene3D ABC transporter type 1, transmembrane domain 232 285 IPR036640 GO:0005524|GO:0016020
Spst3g02856 620 Gene3D ABC transporter type 1, transmembrane domain 4 231 IPR036640 GO:0005524|GO:0016020
Spst3g02856 620 Pfam ABC transporter 499 589 IPR003439 GO:0005524
Spst3g02856 620 SUPERFAMILY ABC transporter transmembrane region 1 193 IPR036640 GO:0005524|GO:0016020
Spst3g02856 620 Gene3D - 499 566 IPR027417 -
Spst3g02856 620 Gene3D - 433 472 IPR027417 -
Spst3g02856 620 Pfam ABC transporter transmembrane region 1 193 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst3g02856 620 Pfam ABC transporter transmembrane region 230 365 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst3g02856 620 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 2 365 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02856 Spst-Chr3 78068413 78074194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02856 222 576 Calmodulin-binding Proteins AT2G36910 26.952 1.22e-34 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02856 K05658 - gmx:100777713 313.923