Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02852 ATGGATGTGGAGGACTGGGATTTGAGCGCAGAGGACCTCGATTCCCTCGAAAGAGATGCTTTCCAGAAGATTTCTCAACTACGCAACCCTCCTCCTCCTTCTTCTCCGCATCAACATCACAATTCTGCAACTACAACAACGAATTACTTCCCACCAAAACCCCTTCCCAATTCGCGTCCCCAAACTGTTGGTGCTTCGTCTCAAGGAGCAAGAGCATTGCCCACGTCATTGAAATCAGGGACAAACAACGACAAACATTCAGAAAAAGGGCTGATAAAGTTTTCAGTCAAATTTTTTCTTCATTCCAGTGGAAATATTGCAGCAAAGTTTCAATATGACCAGGTAGTAGTTGCTGCTTTTCGAAAAGTCCCTAAATCTTCTTGGAATGCAAAGGAACGGTTATGGATATTTCCGCAATCTTCCTTGTCAGAAGCAGAAAAGTTTCTTGGAGAAATATCAGGTTATAATGTTCAGATAGAAAACTTAGATCCCTTAGTGCAACGTGCCATTGCTGCAGCTTCTGCTGTTCCAGATCTTCAAGATCGTTACCACAAGATTCCTAGTTATATTGAATCAAAGCTATTGCCATTTCAGCGAGAAGGTGTTAGGTTTATATTGCAGCATGGAGGACGTGTTCTCTTAGCAGATGAAATGGGACTTGGGAAAACATTGCAAGCCATTGCTGTAGCTTCATGCATTCAGGAGTCGTGGCCTGTTCTCATAATTGCACCATCTTCGTTACGCTTGCAATGGGCTTCTATTGTCTTACCTCAAAGTGGTGGATCAAATAGAGGAGGTTTCAATATAGTATCTTCAAGTGCTAAAAACAGTATTCGTCTGGATGGACTATTCAACATTATCTCATACGAGTTGGTGCCAAAACTACAGAATATGCTTATGACATGTGAATTTAAGGTTGTGATTGCTGATGAATCACATTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCTGTCATAAAGAAAGCTCAATATGCATTATTGCTTAGTGGAACACCTGCGTTATCCAGACCAATTGAACTATTCAAGCAGCTGGAAGCTTTGTATCCTGATGTATATAAGAACGTTCATGAATATGGTAACCGGTACTGCAAGGGTGGATTTTTTGGACTTTATCAAGGTGCGAGTAATCATGAAGAGTTGCACAACTTGATGAAGGCAACAGTGTTGATTCGCAGGCTTAAAAGTGATGTTCTTTCTCAACTTCCTGTAAAGCGCAGGCAACAAGTCTTCCTAGACTTGGCTGACAAGGACATGAAGCAAATTAATGCTTTATTTCGAGAGTTGGGGATGGTAAAAGCTAAAATTAAGGCAGCTAAATCACAAGAGGAGGCAGAATCACTCAAGTTTACTCAAAAGAATATAATTAACAAGATATATACTGATTCAGCAGAAGCCAAGATTCCATCTGTTCTTGATTATGTTGGAACTGTCATTGAGATTAGATGTGAACAGACCGTTGTTGAGCTGATTGATTTATCTCATGCTTCACCTAACCGAATGAGTATGGTTAAGGATGGCATCTGCGGTTTTGCAGGTTGCAAGTTTCTTATATTTGCACACCATCAGCCAATGATTGATTCAATACATGAATTCCTTCGTAAGAAAAAAGTGGGTTGCATCCGGATTGATGGAGGTACACCTGCTGCATCCAGGCAACAATTGATTACAGAGTTTCAGGAAAAGGATTCTATAAAAGCAGCAGTGCTATCTATTAAAGCTGGAGGCGTTGGGTTAACTTTAACTGCTGCCAGCACAGTAATCTTTGCAGAATTGTCTTGGACTCCCGGTGACCTAATTCAGGCCGAGGACCGCGTCCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTGCTAGCAAATGACACGGTTGATGACATCATATGGGATGTAGTGCAAAGCAAACTGGAAAATCTGGGGCAGATGTTAGACGGTCATGAAAAGGCCTTGGAGGTCTCGGCTAGTCTGCCAGAGAATAGCCCTTCAAAGCAGAAAACTCTAGACCAGTTTGTTAGAAGACCTGAAAACATGGATACGTTGGTGAATAGCCCTTCAAGGCAGAAAACACTAGACCAGTTTGTTAGAAGATGTGATAACATGGATAAGTTGGAACATGACCCCGACCCCAACCCCAAACGTCCCCGAAACACTGACCCTTGA 2196 0.418 MDVEDWDLSAEDLDSLERDAFQKISQLRNPPPPSSPHQHHNSATTTTNYFPPKPLPNSRPQTVGASSQGARALPTSLKSGTNNDKHSEKGLIKFSVKFFLHSSGNIAAKFQYDQVVVAAFRKVPKSSWNAKERLWIFPQSSLSEAEKFLGEISGYNVQIENLDPLVQRAIAAASAVPDLQDRYHKIPSYIESKLLPFQREGVRFILQHGGRVLLADEMGLGKTLQAIAVASCIQESWPVLIIAPSSLRLQWASIVLPQSGGSNRGGFNIVSSSAKNSIRLDGLFNIISYELVPKLQNMLMTCEFKVVIADESHFLKNAQAKRTTASLPVIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGFFGLYQGASNHEELHNLMKATVLIRRLKSDVLSQLPVKRRQQVFLDLADKDMKQINALFRELGMVKAKIKAAKSQEEAESLKFTQKNIINKIYTDSAEAKIPSVLDYVGTVIEIRCEQTVVELIDLSHASPNRMSMVKDGICGFAGCKFLIFAHHQPMIDSIHEFLRKKKVGCIRIDGGTPAASRQQLITEFQEKDSIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRVHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHEKALEVSASLPENSPSKQKTLDQFVRRPENMDTLVNSPSRQKTLDQFVRRCDNMDKLEHDPDPNPKRPRNTDP 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02852 731 FunFam Chromatin remodeling factor18 167 427 - -
Spst3g02852 731 Pfam SNF2-related domain 212 456 IPR000330 GO:0005524|GO:0140658
Spst3g02852 731 ProSiteProfiles HARP domain profile. 88 164 IPR010003 -
Spst3g02852 731 Gene3D - 413 713 IPR027417 -
Spst3g02852 731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 403 IPR027417 -
Spst3g02852 731 MobiDBLite consensus disorder prediction 710 731 - -
Spst3g02852 731 MobiDBLite consensus disorder prediction 59 81 - -
Spst3g02852 731 MobiDBLite consensus disorder prediction 38 52 - -
Spst3g02852 731 SMART ultradead3 190 369 IPR014001 -
Spst3g02852 731 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 713 - -
Spst3g02852 731 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 513 663 IPR001650 -
Spst3g02852 731 CDD DEXHc_HARP_SMARCAL1 194 403 - -
Spst3g02852 731 MobiDBLite consensus disorder prediction 17 86 - -
Spst3g02852 731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 303 662 IPR027417 -
Spst3g02852 731 SMART helicmild6 537 620 IPR001650 -
Spst3g02852 731 Gene3D - 167 409 IPR038718 -
Spst3g02852 731 CDD SF2_C_SNF 525 631 - -
Spst3g02852 731 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 203 361 IPR014001 -
Spst3g02852 731 Pfam Helicase conserved C-terminal domain 524 620 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02852 Spst-Chr3 78043772 78053463 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02852 506 661 RAD5 or RAD16-like Gene Family AT1G11100 30.128 2.59e-16 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst3g02852 SNF2_N 1.5e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02852 K14440 - gmx:100778246 1190.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02852 3 78043772 78053463 Spst3g02852 3 78043772 78053463 ECH