Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02846 ATGGAGGGCAAAGTTGCACTGAAAAAATTGCTGGAAGTTCAGGAAAAGGCTTGTGTTAGTAATACAGATGCACTGAACTGGACTCAGGAACCGTCCATACGAAATACTCTGGGATATACTCTTCTCAGTTTGAGTCTTAATAACTTGGAGCCTCCCCAAAGTCATGAGCAACAGCCCCTGAACCAATTGGCCTTGTTGCAAATTGAGCTAGAGGAGTTGAAGAAAGAGAATCAAAATTTAAGGTCCATGTTTAATGAGATTACTGAACACTACGCTGCTCTTCAGAGTAAAATGAATAACCAAGTAACACCACAAGAAGCAAAAATCATAGAAGATCAGGCTTTTGAGGCTTCTTGCAAGAAAGCTAGAGTGTCCGTAAGAGCACGATCAGAGTTATCTTTGGGCGATGGGTGTCAATGGAGAAAATATGGACAGAAGATATCAAAGGGTAACCCTTGTCCTCGGGCCTACTATCGTTGCAACATGGGAACGGCATGTCCAGTTCGCAAGCAGGTTCAGAGGTGTGCTGAGGATGAAAGTGTTGTGATCACAACCTATGAGGGGAATCATAATCATTCACTTCCACCAGCAGCTAGATCCATGGCTTGCACAACATCAGCAGCATTAACCATGTTTCTTTCTGGCTCAACCACTAGTTCACATGGCACTACGTTTTCAAATTCTGACCTCTTCTCTTCACTATCTGCTTCTACCCACTATCCATCTGCATCATCATGTCCCACTGTAACACTGGACTTAACCCAGCCCTCTAAGGACTACCTCAAATTCCCAAGTGCAAGTGCTATTTCTTCAAACCACTCTCAAACTGCCCCTCTTTCATTGCATGCTTACCCTCAACAATCTGAGGGGTTACCCTCAGAGAAAAACTTTCCCTTGGTGGATGTTCTTAGTGCTGCCATAACTAGGGATCCTTCTCTTAAGGCAGTACTAGAAGCAACCGTTTCCTCAATCATTGGAGACGCTCAGAACATCCTCTCTGAACATCAATAA 1011 0.4392 MEGKVALKKLLEVQEKACVSNTDALNWTQEPSIRNTLGYTLLSLSLNNLEPPQSHEQQPLNQLALLQIELEELKKENQNLRSMFNEITEHYAALQSKMNNQVTPQEAKIIEDQAFEASCKKARVSVRARSELSLGDGCQWRKYGQKISKGNPCPRAYYRCNMGTACPVRKQVQRCAEDESVVITTYEGNHNHSLPPAARSMACTTSAALTMFLSGSTTSSHGTTFSNSDLFSSLSASTHYPSASSCPTVTLDLTQPSKDYLKFPSASAISSNHSQTAPLSLHAYPQQSEGLPSEKNFPLVDVLSAAITRDPSLKAVLEATVSSIIGDAQNILSEHQ 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02846 336 SUPERFAMILY WRKY DNA-binding domain 133 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst3g02846 336 Pfam WRKY DNA -binding domain 136 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst3g02846 336 ProSiteProfiles WRKY domain profile. 129 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst3g02846 336 Gene3D WRKY domain 119 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst3g02846 336 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 55 105 IPR044810 GO:0003700
Spst3g02846 336 SMART WRKY_cls 134 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst3g02846 336 Coils Coil 63 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02846 Spst-Chr3 77990590 78002410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02846 85 325 WRKY Transcription Factor Family AT4G04450 46.617 1.04e-60 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst3g02846 WRKY 1.1e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02846 - - pvu:PHAVU_003G124000g 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02846 3 77990590 78002410 Spst2g01560 2 14303160 14309711 PCT
Spst9g02756 9 61797601 61801953 Spst3g02846 3 77990590 78002410 PCT