Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02840 ATGGTTAAGCAAGGGAACTTTATTGGGTTTGATAAAATCCCAAGGTTGGAAACCAGTTTGGTGTGGAAAGAAGGCCATGTTGGTGATCAAGGGGAACAATTAAATGAGATGTTAAGTAGGTTGGTGTTTAGGGCCAACACAAAGGTGCAACAATTGGGGCTCAGTGCACGAGGCCCACCTCTTCCTTTGACATGGCTACCTCTTGTTCCCACACTGTGTCTTCTTGTGTTCAAGGAGTATGCAGAAACAAGTCCTGACTGGAATCTGATGCTCAAACTCAACAACAACCCACTTCCTTGTGGACATGTCGCCCACCCTCAGGGCAAATCAAAACCAAAGAGAGACCCTAAGGTGGCGGCTTTTCTTTTCAGTCTTGATCAGTTTCATTCATTGGAAGATATGGGAACATTAGAACAAATCGATGCTCCTCAAACCCAGTCATCATCATCTTCATCATCTTCCATTGATAGCAACAACCACCCTTCTAGGACTCCACCACCCTCTTCCCCTTCATCAAGTGTCTGCAGAAACAGAACTGATTTGAGCACTGACCTCAGACTTGGTCTTAGCATCTCTCCTTCTTCTCAATCTCAACCACCTTTCAATTCAACACCAAGGGAGGAAAGTTTCAACTGGCCACCAATTAAGTCCATATTGAGGAGCACCCTTGTGGGGAAACAAAGCCTTCTGAGCCAAAGGCCCTCTTTATTTGTCAAAGTCTACATGGAAGGCATCCCCATCGGAAGAAAATTAAATCTGATGGCACATTATAGCTACGATGGACTTGTGAAAACTCTTGGCCATATGTTCAGGACCACCATTCTGTGTCCTAACTCTCAACCACTCAATTCTGGGAATTTTCACGTGCTAACTTACGAGGATCAAGAAGGGGACTGGATGATGGTTGGAGATGTGCCGTGGGAGATGTTCTTGAGCAGTGTGAAGAGGCTGAAGATCACGAGAGCTGACAGATGCTAG 978 0.455 MVKQGNFIGFDKIPRLETSLVWKEGHVGDQGEQLNEMLSRLVFRANTKVQQLGLSARGPPLPLTWLPLVPTLCLLVFKEYAETSPDWNLMLKLNNNPLPCGHVAHPQGKSKPKRDPKVAAFLFSLDQFHSLEDMGTLEQIDAPQTQSSSSSSSSIDSNNHPSRTPPPSSPSSSVCRNRTDLSTDLRLGLSISPSSQSQPPFNSTPREESFNWPPIKSILRSTLVGKQSLLSQRPSLFVKVYMEGIPIGRKLNLMAHYSYDGLVKTLGHMFRTTILCPNSQPLNSGNFHVLTYEDQEGDWMMVGDVPWEMFLSSVKRLKITRADRC 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02840 325 ProSiteProfiles PB1 domain profile. 235 324 IPR000270 GO:0005515
Spst3g02840 325 MobiDBLite consensus disorder prediction 169 209 - -
Spst3g02840 325 Pfam AUX/IAA family 196 321 IPR033389 -
Spst3g02840 325 Gene3D - 230 325 - -
Spst3g02840 325 MobiDBLite consensus disorder prediction 141 209 - -
Spst3g02840 325 SUPERFAMILY CAD & PB1 domains 232 319 - -
Spst3g02840 325 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 181 323 IPR003311 GO:0005634|GO:0006355
Spst3g02840 325 MobiDBLite consensus disorder prediction 141 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02840 Spst-Chr3 77949988 77955566 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02840 238 325 B3 DNA Binding Superfamily AT2G46530 35.227 9.80e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Spst3g02840 AUX_IAA 6.4e-32 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02840 K14484 - gmx:100527448 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02840 3 77949988 77955566 Spst3g02840 3 77949988 77955566 ECH