Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02827 ATGGCTACGAGGATTGCTCTTGATAGTGTTGATGGAAGGAGTGAGAACATGGAGTTTCACACCACCTTAACTGATGACGGTTATAAGATGCATTTCTCTGCGACCAGGCCAGTGGTAGTGCCATCATCTGGACAGATTAAAGTGAGTCCTAGTCCAACCAAGTTTACCATCCTGTATAAGGGGAATATGTGTATTTATGAAGGAATTCCTGCAGAAAAGGTGCGTGAAATTATGTTGATTGCTTCTGCATCTGCTAAGTCTGCTGAAATGAAGAGTGGAGTCCCTTTGACTTCACTCATTCCCACAAGGCCTTCTTCTCCACAGGGAAACTCTACTAATTATGCAAACAAGAGTTCCATTTGCAGGCTGCAAGATGAATTCCCTCTAGCACGCAGACAATCACTTCAAAGGTTTCTTGAGAAGCGAAGAAACAGGTTGGCTAACAAAGGACCTTATGCCTCAACAAAAAACTTGGCTCACAACATGGAGAACAACTTCTGCTCTGACAACACACCAGATTTTGGTTCCTTGGACTATCAGAGGAGGAATTTCAGCCCAGTGTTGTTGCCTCTTTAA 576 0.4358 MATRIALDSVDGRSENMEFHTTLTDDGYKMHFSATRPVVVPSSGQIKVSPSPTKFTILYKGNMCIYEGIPAEKVREIMLIASASAKSAEMKSGVPLTSLIPTRPSSPQGNSTNYANKSSICRLQDEFPLARRQSLQRFLEKRRNRLANKGPYASTKNLAHNMENNFCSDNTPDFGSLDYQRRNFSPVLLPL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02827 191 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 46 158 IPR040390 -
Spst3g02827 191 SMART tify_2 48 83 IPR010399 -
Spst3g02827 191 Pfam tify domain 49 82 IPR010399 -
Spst3g02827 191 Pfam Jas motif 128 152 IPR018467 -
Spst3g02827 191 ProSiteProfiles Tify domain profile. 48 83 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02827 Spst-Chr3 77814890 77817354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02827 52 155 Tify Gene Family AT5G20900 39.474 1.08e-19 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Spst3g02827 tify 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02827 K13464 - gmx:100306282 253.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02827 3 77814890 77817354 Spst9g02769 9 61885464 61888193 PCT