Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02825 ATGGGGTTCTACGTTGAAGACCCTCTCTCTGGCTTGACAATAGGGCAGGCCATATACGAGGTAGCTCTCATCATTGCAGTTCTGAGATGGGTCTTGTGCTTGCTCTTCAGACTCATCAATGACAGAAGAACAAGGTCTGAAGATACCCCACCTGAATCTTGTCCTCAGACGACAAGGGACAGGGACAGCACCCTTGTTCTGACCACGTTCGGGGAGATTAAGGAGAGGCTGCCACAGACGGAGGACACGTGTGCAGTTTGTCTGAGCCAGCTGGAGGTGGATGACGAGGTTCGGGAACTCATGAACTGTTACCACGTGTTTCACAGAGAGTGCATAGACCGATGGTTGGAGCATGAACACGAGAATCACAACCCCACTTGTCCACTCTGCAGAGCCCCTTTGCTGAGTTCTTGCTGCCACCACAACTCTGCCACGTCCCTCCCTCCTCCTCAGCCTAGCTGGGCTGTGGAGAGACTTCTCTATCTCTTTGGGGATGATTTGCTACCTTGTTAG 513 0.5244 MGFYVEDPLSGLTIGQAIYEVALIIAVLRWVLCLLFRLINDRRTRSEDTPPESCPQTTRDRDSTLVLTTFGEIKERLPQTEDTCAVCLSQLEVDDEVRELMNCYHVFHRECIDRWLEHEHENHNPTCPLCRAPLLSSCCHHNSATSLPPPQPSWAVERLLYLFGDDLLPC 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02825 170 SUPERFAMILY RING/U-box 78 137 - -
Spst3g02825 170 PANTHER RING ZINC FINGER PROTEIN-RELATED 22 168 - -
Spst3g02825 170 SMART ring_2 84 130 IPR001841 -
Spst3g02825 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 136 IPR013083 -
Spst3g02825 170 Pfam Ring finger domain 82 131 IPR001841 -
Spst3g02825 170 ProSiteProfiles Zinc finger RING-type profile. 84 131 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02825 Spst-Chr3 77800264 77800776 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02825 1 167 C3H Transcription Factor Family AT5G20885 47.778 9.07e-44 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02825 K16281 - gmx:100306203 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02825 3 77800264 77800776 Spst3g02825 3 77800264 77800776 ECH