Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02783 ATGCAATCACAACAGATTCCTGTGAACCAATCCCAGAATACACAGAAATCACTTACCATCACCAGAGCTCCCTCTACATTAACAGATGGAGATGCCCCATCATGTTCAACTTCTCCATCGACTAATAACTGTCAGGTGTCTCCTCCAAACCTCCTGAAAAGAAATCAGCAACTACCAGCTACATTAGGGGGGAGTTTGATAGTTGATCCCACTAGTAATCTGATTCAGGATCTTCACAGTAAGCCTGACATGCAGAACAAACATGAGTTGCTCAATGTAAAAGGACCTGACCAGTTGAAGTATAAAGGGGCAATCACTGATCAGCTGGAAGCTTCTTCTTCTGGAACATCTTACTGCCTTGATCCTGGAAATGTCCAACAGAACTTGCCACTTTCCAACTTCTGCATGGAAGGGGATGTCCAATCACACCCAAGAAACAGTTTGCCGTTTGACTCTAATCTGGATGGTCTAACGCCTGATACTATGCTTTTAAGAGGGTATGACTCTTCAAAAGATCTTCAAAATTTGTTATCGAACTATGGTGGTGCTCCTAGAGACCTTGAAACTGAGCTGTCAACTGCTGACATGAGCTCGCAGTCGTTTAGGGTGTCAAACATGCCTTTCAGCTCTAGTGATGTTGTCATCAATGACACTGGTGTTCTGAATAATAATGGCTTGCGGGCTAACCAAACCCCACGAATGCGGACATATACTAAGGTTCAAAAGCGTGGCTCTGTTGGACGATGTATTGATGTTACCCGTTACAAGGGATATGATGAACTTCGGCATGATTTGGCTAGAATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCAAAGGACTGACTGGAAATTAGTATATGTGGATCATGAAAATGACATCCTTCTTGTTGGTGATGACCCTTGGGATGAATTCGTAAACTGTGTACAAAGCATAAAGATATTGTCATCTGCAGAAGTGCAGCAAATGAGCTTGGATGGGGATTTAGGTGGTAATGTTCCACTCCCCAACCAAGCTTGTAGTGGGACAGACAGTGGCAATGCATGGAGGGGACAATATGAAGATAACTCAGCTGCCTCATTTAATAGGTAA 1092 0.435 MQSQQIPVNQSQNTQKSLTITRAPSTLTDGDAPSCSTSPSTNNCQVSPPNLLKRNQQLPATLGGSLIVDPTSNLIQDLHSKPDMQNKHELLNVKGPDQLKYKGAITDQLEASSSGTSYCLDPGNVQQNLPLSNFCMEGDVQSHPRNSLPFDSNLDGLTPDTMLLRGYDSSKDLQNLLSNYGGAPRDLETELSTADMSSQSFRVSNMPFSSSDVVINDTGVLNNNGLRANQTPRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWDEFVNCVQSIKILSSAEVQQMSLDGDLGGNVPLPNQACSGTDSGNAWRGQYEDNSAASFNR 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02783 363 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 25 324 IPR044835 GO:0003677|GO:0006355|GO:0009725
Spst3g02783 363 Pfam AUX/IAA family 217 321 IPR033389 -
Spst3g02783 363 FunFam Auxin response factor 230 324 - -
Spst3g02783 363 MobiDBLite consensus disorder prediction 340 363 - -
Spst3g02783 363 MobiDBLite consensus disorder prediction 1 48 - -
Spst3g02783 363 SUPERFAMILY CAD & PB1 domains 248 313 - -
Spst3g02783 363 Gene3D - 231 324 - -
Spst3g02783 363 ProSiteProfiles PB1 domain profile. 235 328 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02783 Spst-Chr3 77387546 77388859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02783 1 363 B3 DNA Binding Superfamily AT1G19220 57.963 1.49e-131 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Spst3g02783 AUX_IAA 4e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02783 K14486 - gmx:100816054 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02783 3 77387546 77388859 Spst3g02783 3 77387546 77388859 ECH
Spst3g02783 3 77387546 77388859 Spst9g02799 9 62230551 62237964 PCT