Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02782 ATGGCAACCTCTCAAATGACTGCATCATTGAGGAATTTGCCCGCATTTGAAAGGTTTCAACCCTCAACGCTTCGATTTCCTTCTCTTGGGCACGTGAGAATTGGCACCCTCACACAAACCTCACCCTCTCTTGTAGTCAAAGCTGCGACTGTTGTCACCCCCAAGCACACCACTGTTAAGCCTCTGGGTGAGAGAGTACTGGTGAAAATTAAGGATGCTGAGGAGAAGACTGCAGGTGGGATTTTACTGCCAACAACTGCTCAAAGCAAACCTCAAGGGGGTGAAGTGGTTGCTGTTGGAGAAGGGAAGTCGATTGGGAAAAACAACGTGGATATTAGTGTGAAGACTGGTGCACAAGTTGTGTATTCAAAGTATGCAGGGACTGAGGTGGAGTTCAATGGTTCAAAGCATCTTATACTGAGGGACGATGACATCATTGGTATCCTTGAAACCGATGAGGTCAAGGATCTTAAACCCTTGAACGATAGAGTTTTGATAAAGGTTGCAGATGCTGAGGAAAAAACTGCTGGTGGTTTGTTGCTAACAGAGGCAACCAAGGAGAAACCATCTATTGGAACGGTGATAGCAGTGGGGCCGGGGCCTCTGGATGAGGAAGGTAACAGAAAACCATTGTCCATCACACCAGGGAATACCGTTCTGTACTCCAAATTTGCGGGGAATGACTTCAAGGGCAAAGATGATTCTAACTACATTGCCTTAAGAGCTTCGGAAATCATGGCTATCCTGTCCTAG 753 0.4661 MATSQMTASLRNLPAFERFQPSTLRFPSLGHVRIGTLTQTSPSLVVKAATVVTPKHTTVKPLGERVLVKIKDAEEKTAGGILLPTTAQSKPQGGEVVAVGEGKSIGKNNVDISVKTGAQVVYSKYAGTEVEFNGSKHLILRDDDIIGILETDEVKDLKPLNDRVLIKVADAEEKTAGGLLLTEATKEKPSIGTVIAVGPGPLDEEGNRKPLSITPGNTVLYSKFAGNDFKGKDDSNYIALRASEIMAILS 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02782 250 SMART Cpn10_2 58 149 IPR020818 GO:0005524|GO:0006457|GO:0044183
Spst3g02782 250 SMART Cpn10_2 156 249 IPR020818 GO:0005524|GO:0006457|GO:0044183
Spst3g02782 250 PANTHER 10 KDA HEAT SHOCK PROTEIN 154 248 IPR020818 GO:0005524|GO:0006457|GO:0044183
Spst3g02782 250 FunFam 20 kDa chaperonin, chloroplastic 52 151 - -
Spst3g02782 250 ProSitePatterns Chaperonins cpn10 signature. 157 181 IPR018369 GO:0005524|GO:0006457
Spst3g02782 250 FunFam 10 kDa chaperonin 154 250 - -
Spst3g02782 250 PIRSF Cpn21 1 250 IPR017416 GO:0006457|GO:0046914|GO:1901671
Spst3g02782 250 Pfam Chaperonin 10 Kd subunit 157 248 IPR020818 GO:0005524|GO:0006457|GO:0044183
Spst3g02782 250 Pfam Chaperonin 10 Kd subunit 59 148 IPR020818 GO:0005524|GO:0006457|GO:0044183
Spst3g02782 250 Gene3D GroES chaperonin 152 250 IPR037124 GO:0006457
Spst3g02782 250 Gene3D GroES chaperonin 52 151 IPR037124 GO:0006457
Spst3g02782 250 CDD cpn10 157 249 IPR020818 GO:0005524|GO:0006457|GO:0044183
Spst3g02782 250 Hamap Co-chaperonin GroES [groES]. 58 150 IPR020818 GO:0005524|GO:0006457|GO:0044183
Spst3g02782 250 ProSitePatterns Chaperonins cpn10 signature. 59 83 IPR018369 GO:0005524|GO:0006457
Spst3g02782 250 SUPERFAMILY GroES-like 57 150 IPR011032 -
Spst3g02782 250 Hamap Co-chaperonin GroES [groES]. 156 250 IPR020818 GO:0005524|GO:0006457|GO:0044183
Spst3g02782 250 PRINTS 10kDa chaperonin signature 136 149 IPR020818 GO:0005524|GO:0006457|GO:0044183
Spst3g02782 250 PRINTS 10kDa chaperonin signature 81 102 IPR020818 GO:0005524|GO:0006457|GO:0044183
Spst3g02782 250 PRINTS 10kDa chaperonin signature 59 74 IPR020818 GO:0005524|GO:0006457|GO:0044183
Spst3g02782 250 PRINTS 10kDa chaperonin signature 115 127 IPR020818 GO:0005524|GO:0006457|GO:0044183
Spst3g02782 250 SUPERFAMILY GroES-like 156 249 IPR011032 -
Spst3g02782 250 CDD cpn10 58 149 IPR020818 GO:0005524|GO:0006457|GO:0044183
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02782 Spst-Chr3 77382527 77384432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02782 1 250 Calmodulin-binding Proteins AT5G20720 71.094 8.58e-127 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02782 K04078 - gmx:100804915 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02782 3 77382527 77384432 Spst3g02782 3 77382527 77384432 ECH
Spst3g02782 3 77382527 77384432 Spst9g02800 9 62239766 62242350 PCT