Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02780 ATGTCGACCTCGTCGGAGTATTCAGGATTTTCCGGCAACCGGACGGCCAAGTCGCCGCCGGAGAAGTCCACGTTCTCTCAGACTTGCAGTCTATTGAGCCAGTACCTCAAGGAAAAGGGTACCTTCGGAGACCTTACCCTCGGGATGACATGCACCGTCGAAGCAAACGGTTCTTCTGAAACATCGTGCCACTCTGCAACAACCATGGAGTTATTTCCCACCATTGTGACACAACGGAACCACCCTTCTGCTGCTGTGGATTTCCTCTCTCAGCAGACTGCTTATCCTCACTTCTCAGAGGTTCCAACCTTGGTTAAATCAAGTGCTTTCAAGTCTATGGAGAAAGAGCCTAAAGCTGCTCAGTTGACGATCTTTTATGCTGGACAAGTGGTTGTGTTTAATGATTTTCCCTCTGAAAAAATGGAGCAGATAATGTCATTGGCCAGCAAGGGAATGTCCCAAAGCCCAAACTACTCTGCATATGCTCACACAAGTTACCAGCAAGGCCCTCAAGCACCATCCGGAACAATTGCTTGTGATCTTCCAATTGCGAGGAAAGTTTCACTTCACCGGTTTCTCGAGAAGAGGAAAGATAGAATCCATATAGTTATTCAAACGCAATTGAAGATGCAGCAGCAGAGGTTAAGGCAGCATGCCATGATGCAACCCTCTCTCTACCACCACCCTGCTCTCCTTACTCCTCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCAAGTACATGCCGCAGTGTTTATGTTGGCAACATTCATCCCAAGGTTACAGAAACCCTTCTTCAAGAGCTTTTTTCAGCTGCAGGCGCCCTTGAAGGATGCAAGCTTATTAAGAAAGAGAAGTCATCCTATGGCTTTGTGGACTACTTCGATCGCAGTTCTGCTGCATTTGCTATTGTAACTCTCAATGGGAGGAATATTTTTGGGCAGCCTATTAAGGTTAACTGGGCTTTTGCTAGCAGCCAGAGAGAGGATACCTCAGGTCACTTTAATATTTTTGTCGGTGATCTTAGTCCCGAGGTAACAGATGCGACGTTGTATGCTTGCTTCTCTGTATATCCTACTTGTTCTGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGGATGCCCAAGGTGCTATAAATGATTTGACAGGAAAATGGCTAGGAAGCAGACAGATTCGTTGTAATTGGGCAACCAAAGGTGCCAGTGCCAGTGATGAAAAGCAGGGTTCGGATTCTAAAAGTGTCGTTGAGTTAACTAATGGAACATCCGAAGAAGGCCAGGAAATAACCAATGATGACGCCCCTGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCTGAGGTTACTTCTGTTAATCTCCATCACCATTTTCATTCTCTTGGTGCCGGAACTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGATACAGTACCCATGCTGAAGCAGCTCTTGCTATACAGATGGGTAATGCTCAAATTCTCTTTGGCAAACCTCTCAAGTGTTCATGGGGTAGCAAGCCTACTCCTCCAGGAACAGCCTCTACTCCTCTTCCCCCACCTACTTCTGCGAATGTGCCGGGCTTTTCTCTTGCTGGTCTTGCAGCATATGAACGCCAAATGGCTTTGAGTAAAATGGGTGGAGCAAATGCCCTTATGCTTCAGCAAGGACAACATGCCCTAAAACAGGTAGCCATGGGAATGGGTGGTCCAGGGCCTGGTTATGATGCAAGGTTTCAGAATGTTGCGACTACCCAGCACCTAATGTACTATCAGTAA 1863 0.4654 MSTSSEYSGFSGNRTAKSPPEKSTFSQTCSLLSQYLKEKGTFGDLTLGMTCTVEANGSSETSCHSATTMELFPTIVTQRNHPSAAVDFLSQQTAYPHFSEVPTLVKSSAFKSMEKEPKAAQLTIFYAGQVVVFNDFPSEKMEQIMSLASKGMSQSPNYSAYAHTSYQQGPQAPSGTIACDLPIARKVSLHRFLEKRKDRIHIVIQTQLKMQQQRLRQHAMMQPSLYHHPALLTPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPKVTETLLQELFSAAGALEGCKLIKKEKSSYGFVDYFDRSSAAFAIVTLNGRNIFGQPIKVNWAFASSQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQGAINDLTGKWLGSRQIRCNWATKGASASDEKQGSDSKSVVELTNGTSEEGQEITNDDAPEKNPQYTTVYVGNLAPEVTSVNLHHHFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNAQILFGKPLKCSWGSKPTPPGTASTPLPPPTSANVPGFSLAGLAAYERQMALSKMGGANALMLQQGQHALKQVAMGMGGPGPGYDARFQNVATTQHLMYYQ 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02780 620 Pfam Jas motif 182 200 IPR018467 -
Spst3g02780 620 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 252 538 - -
Spst3g02780 620 Pfam tify domain 116 149 IPR010399 -
Spst3g02780 620 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 461 535 IPR000504 GO:0003723
Spst3g02780 620 ProSiteProfiles Tify domain profile. 115 150 IPR010399 -
Spst3g02780 620 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 340 418 IPR000504 GO:0003723
Spst3g02780 620 SMART tify_2 115 150 IPR010399 -
Spst3g02780 620 SUPERFAMILY RNA-binding domain, RBD 254 418 IPR035979 GO:0003676
Spst3g02780 620 SUPERFAMILY RNA-binding domain, RBD 452 540 IPR035979 GO:0003676
Spst3g02780 620 SMART rrm1_1 462 531 IPR000504 GO:0003723
Spst3g02780 620 SMART rrm1_1 256 325 IPR000504 GO:0003723
Spst3g02780 620 SMART rrm1_1 341 414 IPR000504 GO:0003723
Spst3g02780 620 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 342 412 IPR000504 GO:0003723
Spst3g02780 620 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 463 529 IPR000504 GO:0003723
Spst3g02780 620 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 257 323 IPR000504 GO:0003723
Spst3g02780 620 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 255 329 IPR000504 GO:0003723
Spst3g02780 620 MobiDBLite consensus disorder prediction 418 457 - -
Spst3g02780 620 Gene3D - 438 539 IPR012677 -
Spst3g02780 620 Gene3D - 333 434 IPR012677 -
Spst3g02780 620 FunFam oligouridylate-binding protein 1-like isoform X2 338 433 - -
Spst3g02780 620 MobiDBLite consensus disorder prediction 1 23 - -
Spst3g02780 620 Gene3D - 242 332 IPR012677 -
Spst3g02780 620 FunFam Oligouridylate-binding protein 1C 438 539 - -
Spst3g02780 620 CDD RRM2_PUB1 339 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02780 Spst-Chr3 77356293 77365872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02780 1 200 Tify Gene Family AT1G19180 42.920 4.13e-40 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Spst3g02780 RRM_1 6.9e-17 CL0221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02780 K13201 - gmx:100813736 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02780 3 77356293 77365872 Spst3g02780 3 77356293 77365872 ECH