Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02778 ATGGCCGCTGTTCGCCCCTTCTTCTTCTTACTCCTCCTCCTCCTCTCCCTCCTCCCTCTCTCCCTCCCCCTTACCCTCCCTGAAAACCAAGCCCTTCTCACCCTCAAACAATCCTTCTCTAACCCCCAAACCCTCTCTTCCTGGGTCCCTGACCAGAACCCCTGCACCGCCCGCTGGGTCGGCATCATCTGCGTCAACAACGTCATCAGCAGCCTCCACCTCACTGACCTCTCGCTTTCCGGCTCTATTGACATCGAAGCCCTCTCCCAGATCCCCTCTCTCCGCTCCATTAGCCTCATCAACAACTCCTTCACCGGCCCCATCCCTCACTTCAATAAACTCGGAGTCCTCAAGGCCCTCTACTTGACCAACAACAAGTTCTCTGGGCCCATCCCCTCCGATTACTTCTCCCATTTAGCCTCCTTGAAGAAAGTATGGCTCTCCAACAACCAATTCTCCGGTCCCATCCCCGACTCCTTAGGCACCCTCCGTTACCTCTCCGAGCTCCACGTCGAGAACAACCAGTTCTCCGGCCCCGTCCCCGAACTCAAACAGGACATCAAGTCCCTCGACATGTCCAACAACAAGCTCGAAGGCCTAATTCCCTCCTCCATGGCGCGCTTCGATGCCAAATCCTTTTCCAACAATGAACAACTCTGCGGGAAGCCTCTGGATAAAGAGTGTGGGTCCCATCCCAGCACTGGTGTAGCTGCTGGTGCTGGTGCTGGTGCTGGTTCTGGTGCTGGTGCTGGTGCTGGGGCTGCTGATGCTGGCTCCGGTTGGGGGTTGAAGGTGGTTATGCTCATCTTCATTGCCGCTGTTCTCGCCGGGGCTTTTGTCATGGTCAAGTCCAAGCGTGAACGCGAAGATGACTTCAGTGTGATGAGCAGGGATAATGCAGAGCAGGTGGTGCAGGTACACGTACCGAGCAGCAACCACAGCAGGGGATCCGAGGGGAGCAAGAAGGAGTCGTCGGGGGCGCCGAAGAAAGGGTCATCCCGGAGTATGGGTGACCTCGTGATGGTGAACGACGTCAAGGGCGCGTTTGGCTTGCCCGATTTGATGAAGGCTGCGGCGGAGGTTCTCGGGAACGGTGGGATGGGTTCGGCGTACAAAGCCGCCATGGCTAGTGGCTTGTCTGTGGTGGTAAAGCGGATGCGCGAGATGAATAAAGTGAGCAGAGACATCTTCGACGCCGAGATGAGACGCTTTGGGAGACTCAAAAACCCTAACATTCTGACTCCTCTCGCTTACCATTACCGCAAGGAGGAAAAGCTCTTCATTACGGAATACATGCCCAAAGGAAGCTTGTTATACGTCTTGCACGGTGACAGAGGATCGAGTCATTCGGACCTGACTTGGCCAATCCGTTTGAATATTGTAAAGGGAATAGCACGAGGGTTAGGGTTTCTATATAAAGAATTTTCGAACGAAGACCTGCCGCATGGGAACCTGAAATCCTGCAATGTTCTGCTAACTAATAATTACGAGCCTCTCCTAGGCGACTATGCCTTTCATCCGCTCATCAACCCCAACTACGCCGTACAGACATTGTTTGCCTACAAAACTCCGGATTACGTATCATACCAGCGTGTTACACAGAAAACCGACGTTTATTGCCTCGGAATCATCGTTCTCGAGATCATCACCGGCAAATTCCCTTCTCAATATCACAGTAATGGCAAGGGTGGGACTGACGTAGTGCACTGGGTGTTCACTGCAATCTCTGAGAGAAGAGAGGCAGAACTGATTGATCCAGAGTTGAAGAGCAGTCGCCCTAATTCCCTCAATCAAATGCTACAACTTCTCCAAATAGGGGCTGCTTGCACGGAGAGCAACCCCGACCAACGACTTAACATGAAGGAAGCCATTAGGAGGATAGAGGAGGTTCAGGTTTAA 1899 0.5329 MAAVRPFFFLLLLLLSLLPLSLPLTLPENQALLTLKQSFSNPQTLSSWVPDQNPCTARWVGIICVNNVISSLHLTDLSLSGSIDIEALSQIPSLRSISLINNSFTGPIPHFNKLGVLKALYLTNNKFSGPIPSDYFSHLASLKKVWLSNNQFSGPIPDSLGTLRYLSELHVENNQFSGPVPELKQDIKSLDMSNNKLEGLIPSSMARFDAKSFSNNEQLCGKPLDKECGSHPSTGVAAGAGAGAGSGAGAGAGAADAGSGWGLKVVMLIFIAAVLAGAFVMVKSKREREDDFSVMSRDNAEQVVQVHVPSSNHSRGSEGSKKESSGAPKKGSSRSMGDLVMVNDVKGAFGLPDLMKAAAEVLGNGGMGSAYKAAMASGLSVVVKRMREMNKVSRDIFDAEMRRFGRLKNPNILTPLAYHYRKEEKLFITEYMPKGSLLYVLHGDRGSSHSDLTWPIRLNIVKGIARGLGFLYKEFSNEDLPHGNLKSCNVLLTNNYEPLLGDYAFHPLINPNYAVQTLFAYKTPDYVSYQRVTQKTDVYCLGIIVLEIITGKFPSQYHSNGKGGTDVVHWVFTAISERREAELIDPELKSSRPNSLNQMLQLLQIGAACTESNPDQRLNMKEAIRRIEEVQV 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02778 632 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Spst3g02778 632 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 631 IPR046959 -
Spst3g02778 632 Gene3D Ribonuclease Inhibitor 188 228 IPR032675 -
Spst3g02778 632 Pfam Protein kinase domain 360 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g02778 632 ProSitePatterns Protein kinases ATP-binding region signature. 362 384 IPR017441 GO:0005524
Spst3g02778 632 FunFam Nuclear pore complex protein NUP107 26 182 - -
Spst3g02778 632 Gene3D Transferase(Phosphotransferase) domain 1 433 632 - -
Spst3g02778 632 Gene3D Ribonuclease Inhibitor 136 186 IPR032675 -
Spst3g02778 632 Gene3D Ribonuclease Inhibitor 27 135 IPR032675 -
Spst3g02778 632 ProSiteProfiles Protein kinase domain profile. 356 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g02778 632 SUPERFAMILY Protein kinase-like (PK-like) 360 627 IPR011009 -
Spst3g02778 632 SUPERFAMILY L domain-like 27 208 - -
Spst3g02778 632 MobiDBLite consensus disorder prediction 306 335 - -
Spst3g02778 632 Gene3D Phosphorylase Kinase; domain 1 362 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02778 Spst-Chr3 77333684 77335759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02778 1 632 Receptor kinase-like Gene Family AT3G42880 49.848 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Spst3g02778 Pkinase 4.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02778 - - vum:124828555 999.193