Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02744 ATGAATGGAAGGAACAGGTTCCCCTTCACTCCCTCCCAGTGGCAAGAGCTTGAACACCAAGCCCTCATCTACAAATACATGGCTTCAGGTATCTCTATCCCTCCTGACCTTCTCTTCACCATCAAAAGGACCCACTTGGACTCTCCTCTCTCCTCAAGGCTCCTGCCTCACCAGTCTCAACACTTTGGGTGGAACTATTTGCCAATGGGGTTGGGGAGGAAAATAGACCCTGAGCCAGGGAGATGTAGGAGAACAGATGGGAAGAAATGGAGGTGCTCAAAGGAGGCGTATCCAGATTCAAAGTACTGCGAGAGGCACATGCATAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCAACGACAGCAACAACAAACACAGATGCCTCAACCCCCACAATCTTATCAATCACCAAAAACAGTCCTGCACTCTCCCCAACCACACATTCTCTCTCCGCGTCCTCTCATGACACTTACCATCATCACCACCCTCAACATTCCTCCCACTCCTTCCTCTATCATCAACCCTCGAGACCCTCTTCCGGTGTTGCTTTGTCATTTCAAGACAACAGTGCCCCCTTGTTTCTCGACACTGTTTCTTGCTCTCAGAATAACAACACTGACTGCAGGTATGTGTATGGACTGAAGGAGGAGGTGGATGAACATGCCTTCTTCACCGAACCTTCTGGAACAATGAGAAGCTTCTCTGCTTCCTCAATGGAAGATTCATGGCAACTCACGCCACTGACCATAAGCTCATCTTCCTCTTCAAAACAGAGGAGTTGCTCTGGTTTATCCAACGACAACAACGAGTACTCCTACTTGCAACTTCAGAGCCTCAGTGGCAACAACTCAAAACAGCCACAGCAAGATCAGGGTTGCTACATATCAGGCACTGGCAGTGATATCAAGTGTGAAAGCTTCATGAAACTTGGGAAAGAAGAACCTCAGAAAACTGTTCATCGCTTCTTCGATGAATGGCCCCCCAAGAGCAGAGGATCGTGGCTAGATTTGGATGATAAATCATCCACCACCCAGCTTTCAATTTCCATTCCCACTTCTTCTCATGATTTTGCAACTTTCAGTTCAACAACCCAACGAGGTAATGAACAATGA 1131 0.4739 MNGRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRTHLDSPLSSRLLPHQSQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPTTATTNTDASTPTILSITKNSPALSPTTHSLSASSHDTYHHHHPQHSSHSFLYHQPSRPSSGVALSFQDNSAPLFLDTVSCSQNNNTDCRYVYGLKEEVDEHAFFTEPSGTMRSFSASSMEDSWQLTPLTISSSSSSKQRSCSGLSNDNNEYSYLQLQSLSGNNSKQPQQDQGCYISGTGSDIKCESFMKLGKEEPQKTVHRFFDEWPPKSRGSWLDLDDKSSTTQLSISIPTSSHDFATFSSTTQRGNEQ 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02744 376 MobiDBLite consensus disorder prediction 125 180 - -
Spst3g02744 376 MobiDBLite consensus disorder prediction 125 159 - -
Spst3g02744 376 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Spst3g02744 376 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Spst3g02744 376 PANTHER GROWTH-REGULATING FACTOR 5 8 362 IPR031137 GO:0005634|GO:0006351|GO:0032502
Spst3g02744 376 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Spst3g02744 376 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Spst3g02744 376 Pfam WRC 77 119 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02744 Spst-Chr3 77022427 77024237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02744 6 119 GRF Transcription Factor Family AT3G13960 71.930 1.02e-55 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Spst3g02744 WRC 7.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02744 - - gmx:100783524 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02744 3 77022427 77024237 Spst3g02744 3 77022427 77024237 ECH
Spst3g02744 3 77022427 77024237 Spst9g02828 9 62494195 62515221 PCT