Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02736 ATGGGGGGAGCTGAGACGTATAAGACATATAAGAAGAGAATCAATGTTTTGCTTGATGAACAAATAGTACTACAACCAAAAAAGGATTCTGGCCCTACAAATTCTGAAAATAGCACTCAATATGGAGATGATGTTACAACAAAAAAACAGACAGAAGACAAACATTTAAACCAATGCTATTTTGCCCATCCTTCGCTATTGGTTGCCAACGGTCAAGAAAAACCTCGTTGGTTGGGGTGGCGTGGGTGGATAATTGAATTACTTGAGCTCAGAATAAGAGAGGAGATGGAAGGAGTACCGCACCCAGTACCCAGAACTGTGGAGGAGGTTTTCACGGACTTTAAGGGTAGACGCGCTGGTTTGATTAAGGCCCTCACCACCGACGTTGAAAAGTTTTACCAGCAGTGTGATCCTGAGAAGGAAAATCTGTGTCTATATGGGTTTCCAAATGAAACCTGGGAAGTAAATTTGCCTGTTGAGGAAGTGCCTCCTGAACTTCCCGAGCCAGCATTAGGTATAAACTTTGCCAGGGATGGCATGCAAGAGAAGGACTGGTTGTCACTAGTTGCAGTTCACAGTGACTCATGGCTTCTTGCTGTTGCTTTTTACTTTGGTGCCCGCTTTGGATTTGGTAAGAATGAAAGGAAAAGGCTTTTTCAGATGATAAATGATCTGCCAACAATCTTTGAACTTGTGACTGGAAGTGTTAAGCAATCAAAGGATCAACCAGCTACTCAAAACAATGGTAACAAATGCAAATCAAGCGGAAAGGTGTCCCGTCAGTCTGAGTCTCAGGCCAAGGGGATGAAAATGTCTGCACCACCCAAAGAGGAGGATGAGAGTGGAGAGGAAGAAGAAGAAGATGACGAACAAGGTGCAACATGTGGTGCTTGCGGTGATAATTATGGCACTGATGAATTCTGGATCTGTTGTGATATGTGTGAAAGATGGTTCCATGGTAAATGTGTTAAAATTACTCCTGCTAAGGCTGAACACATCAAGCAATACAAGTGCCCCAGCTGCAGTAACAAGAGGGTTAGGGTTTGA 1047 0.4346 MGGAETYKTYKKRINVLLDEQIVLQPKKDSGPTNSENSTQYGDDVTTKKQTEDKHLNQCYFAHPSLLVANGQEKPRWLGWRGWIIELLELRIREEMEGVPHPVPRTVEEVFTDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFELVTGSVKQSKDQPATQNNGNKCKSSGKVSRQSESQAKGMKMSAPPKEEDESGEEEEEDDEQGATCGACGDNYGTDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRVRV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02736 348 SUPERFAMILY FYVE/PHD zinc finger 283 345 IPR011011 -
Spst3g02736 348 PANTHER CPG BINDING PROTEIN 104 347 IPR045104 GO:0006355|GO:0042393
Spst3g02736 348 MobiDBLite consensus disorder prediction 25 48 - -
Spst3g02736 348 MobiDBLite consensus disorder prediction 237 268 - -
Spst3g02736 348 ProSitePatterns Zinc finger PHD-type signature. 295 341 IPR019786 -
Spst3g02736 348 FunFam PHD finger alfin-like protein 287 343 - -
Spst3g02736 348 MobiDBLite consensus disorder prediction 237 293 - -
Spst3g02736 348 MobiDBLite consensus disorder prediction 278 293 - -
Spst3g02736 348 Pfam PHD-finger 295 344 IPR019787 -
Spst3g02736 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 343 IPR013083 -
Spst3g02736 348 ProSiteProfiles Zinc finger PHD-type profile. 292 344 IPR019787 -
Spst3g02736 348 MobiDBLite consensus disorder prediction 27 45 - -
Spst3g02736 348 CDD PHD_AL_plant 295 344 IPR044104 -
Spst3g02736 348 SMART PHD_3 294 342 IPR001965 -
Spst3g02736 348 Pfam Alfin 106 233 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02736 Spst-Chr3 76957720 76965976 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02736 96 345 Alfin-like Transcription Factor Family AT1G14510 81.200 1.53e-131 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Spst3g02736 Alfin 2.8e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02736 K26274 - gmx:100807826 484.952