Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02735 ATGGTGCACTTTAATGACTATGCAGATGGAATTTCAAGTTTTGCTACTGTTCATTCCTACTGTCTAATCATCTTTGGAATTGTGTTAAGTATAAATGGGCATTTGCCATTCTTTGTGGGTGCCGGTGGGTTGAAGAAGAAGAAGAAGACGGCGAAGAAGATGTCAGAAATGCGGGTATCCGAGCTTCACTTGAAAAAGGAGCTCACCCAAATCCGCAAGGCTTCTCGAGTTCTCAGAGATCCTGGCACCACATCTTCTTGGAAGTCACCTCTCAGTTCATCAAGATCTGTGGCTGCATGGAACAAAGACAGTGGAAGTAGAAGGTTCAGCACCAATTCTCAACTTGCCAACAATGACAAAGAGAAAGAGAAGGAGAAAAAGGTGTTCTTGTACAATTGGAAGAACTACAAATCTTCGAGTGAGAAATACAACGAGGAAGAAGAAGATGACGATGATGGAGGTGGATCTTCGTCTCTTCTTGGGGACAGAGACAGAGACAGTTTGAGTGATGCTCGCAATGGTTGTGACTCTAAGAGTGATACATACTTGGGTGCTGGTGGTATTGGTGGCGCTGGTGGCACTCGTTCTTCTATTTTTGGATGTGGGGATGCTAATCTTGTTTCCAGAAGAGCAGTCCCCGTTAAGAAAAAGAGTAAGAAAAATAACCCTCATTTTGATTTTTTAGCCAAGTATCAACAACATAGACAAACGAATCCGGGAAGAAATTTGGTGAGTTCTTCGAAGGGATTGGAGGGACATTCTTCTTTGCCTTTTTTTAGCAGGGATGACTCTGTCGATTTCTCTGATGATACCGAAGATTACACTAATTCTGAGGGTGTGAGACCAATTTCGGGGACTTCCCCTTTGCTTCTAAAACTCAGGCAAAAGAATTGGTCTCGCTCTTCCTCTAAGTTTTTGAGAAGAAGTCGGAAAGAGGACTCTTCTTATTCTTATAGCACCCCTGCATTGTCAACTAGTTCTTACAACAGGTACGGTCACCGTTATCCCAGCACCCTTGGATCCTGGGATGGCACCACCACCTCCGTGAATGATGGCGATGGAGATGATGAGATTGATGATCATTTGGATTTGCCTGGCCGCCAAGGATGTGGGATTCCTTGCTATTGGTCCAAGAGGACTCCTAAACATAAAGGGATGTGTGGGAGTTGTTATTCTCCCTCACTGTCCGACACTTTGATGAGGAAAGGGAGTAGCATGCTCTGTGGAAGTCAAACTATTTATCCCAGACACCGCAGATCGGCTTCGGCCTCTCACAAGAGAAGATTTTCTCAGAGGAGTGCTCGTGGTGTCATTCCATTACTCACAAACAGTGGTGAAGCTAGAGAAGGGTCCTCTGTAGGTACCGGAAGGAGTGATGATGAACTTTCCACTAACTTTGGGGAGCTTGATCTTGAGGGATTGAGCCGGTTGGATGGAAGAAGGTGGTCATCTAGTTGTAGGAGTCAAGAGGGATTGGAGATTGTAGCTCTCAATGTGGAAGGGGAAGATGAGGGCACGCCGGAAAACAGTCGCTGTTTCAGCCAAAAGTATAGGCCAATGTTCTTCGGTGAACTGATTGGGCAGAATATTGTTGTCCAGTCACTTATGAATGCTGTTTCCAGGGGACGAATTGCTCCTGTCTATCTGTTTCAAGGTCCCCGCGGTACTGGCAAAACATCAACCGCAAAGATATTTGCTGCTGCCTTGAACTGTGCAAGTCCCGATGAGAGTAAACCTTGTGGCTACTGCAGGGAATGTACTGATGTCATTTCTGGCAAGAGCAGTGATCTATTGGAAGTTGATGGAACCAATAAGAGAGGAATCGATAAGGCTAGATATCTCCTAAAAAGATTGTCAACTGGGTCATCATCAGCCTCACCACAATATACAGTTTTTGTTATTGATGAGTGTCACTTGTTGCCCTCCAAGACATGGCTGGGATTTCTCAAGTTTCTGGAAGAACCACCCCAGCGAGTTGTATTCATATTTATAACATCTGATCTTGACAATGTGCCACGAACAGTACAATCTCGATGCCAAAAGTACCTTTTTAATAAAATTAAAGATGGGGATATTGTGACCAGGTTGAGGAAAATATCCACTCAGGAGAACCTTGATGTTGAAGCAGATGCACTGGATCTCATTGCTATAAATGCAGATGGTTCACTCCGAGATGCAGAAACAATGTTAGAACAGCTTAGTTTGCTGGGGAAGAGAATTACTACTACTCTTGTCAATGAACTTGTGGGAGTTGTTTCAGATGAAAAATTACTGGAACTTTTGGAGTTAGCAATGTCATCAGATACGGTAGAGACAGTGAAAAGAGCCAGAGAATTGATGGACTCCGGAGTTGACCCAATGGTTTTAATGTCTCAACTAGCTGGCCTTATCATGGACATCATTGCTGGGTCATATGCAGTCATTGATACCAAGCCTGATGATTCGTTCTTTGGTGGTCGGAGTTTGAATGAATCAGAGTTGGAGAGGTTAAAAAATGCTTTGAAGCTTCTCTCAGAGGCTGAGAAACAGTTAAGGACATCCAGTGAACGCTCTACATGGTTCACAGCAACTCTCTTGCAGCTTGGTTCTACACCTTCTCCTGATCTCACGCAGTCAAGCAGCAGCAGGAGGCAGAGCTGTAAGACAACTGAAGATGATCCATCAAGTGTTTCAAGAGATATTACCTCTTGCACGCACAAGTCAGACCCTCAACATGTGCCTCGAAAGTCAGCATACACTGCATCCCAGCAAAAGGCAGTAAATGATAATTTCAACCATCAAAAGGATATATCATCAAAGCTTGAAGGTTTCAGCTTGAAATCAAAGCCGTCAAACAGCCCAGTCATAGATGATGGCTCCACAGTTGTCTCCTCTGATGATCTTATGGTGGGGAATACAATGTATAGGTGCATAGATTCAGGGAAGCTATCTGACATCTGGGTGCATTGTATTGAGAAGTGTCACTCTAAGACATTGAGGCAGCTGCTACACCATCATGGAAAGCTTGTGTCCGTATGTGAAGTAGAAGGTGTTTTGGTAGCGTATGTTGCTTTTGGAGACGCAGATATTAAAGTTCGAGCTGAGAGGTTTTTAAGAAGCATTACAAACTCGATGGAGATGGTTCTGAGGCGCAATGTGGAGGTCCGAATAATCCAGTTGGCTGATGGGGAAGGTGAAAACCAGGTTAATCTAACAGGTGTGAAGCAGGGTGAGTCAATGGTAGGTTGTGAGAAGGAACAAAGACAATGTCATATGAATGGAACGGAGTCTTATTCTAGTATGCCTCCATTGCTGGATAGAAACCTTCAATCTGCGACTGCTTCATCAGATATTTTGGGTGAAGGAAATGGTGGGAGGGAGAGGAGACAAGATAATCCGATGCATAGAATTGAATCCATCATTCGGGAGCAGAGGCTGGAAACTGCCTGGTTACAGGCCGTAGAAAAGGGTTCCCCTGGATCATTAAGTCGTTTGAGACCCGAGAAGAATCAAGTACTGCCTCAGAATGGTGTAGACCCAATGGAGTCCATGGACTCAACAAGATTTTCCTCTCACCAGCATTGGGAAGATGATCCCAATAACGAACTCAAAGTTTTGACCCTTAAAAATGGAAGGGTCCCACAGAAGGATCAGATTGGTAGAAAAGCTGATCGTTTACCCATGTCCCCAAGTTTATTGCATGACAACAGTTTAGCAACAATTTCTGGAAAAGACAATCCGGGATATGAATCAGGGTCCGGTGCAGGTGGTTGTGGATTTTTATGTTGGAATAAGTCGAAGCCTAGAAGGGTAATAAAGGTGAAAGGTGGCACCCCAGTTAGAGGGCGTAGAGGGGCAAGTTTTACATTGTTTGGTGACTGCGGTAAGCAGAAGAAAAGGGAGAGGAAAAGATAA 3894 0.4432 MVHFNDYADGISSFATVHSYCLIIFGIVLSINGHLPFFVGAGGLKKKKKTAKKMSEMRVSELHLKKELTQIRKASRVLRDPGTTSSWKSPLSSSRSVAAWNKDSGSRRFSTNSQLANNDKEKEKEKKVFLYNWKNYKSSSEKYNEEEEDDDDGGGSSSLLGDRDRDSLSDARNGCDSKSDTYLGAGGIGGAGGTRSSIFGCGDANLVSRRAVPVKKKSKKNNPHFDFLAKYQQHRQTNPGRNLVSSSKGLEGHSSLPFFSRDDSVDFSDDTEDYTNSEGVRPISGTSPLLLKLRQKNWSRSSSKFLRRSRKEDSSYSYSTPALSTSSYNRYGHRYPSTLGSWDGTTTSVNDGDGDDEIDDHLDLPGRQGCGIPCYWSKRTPKHKGMCGSCYSPSLSDTLMRKGSSMLCGSQTIYPRHRRSASASHKRRFSQRSARGVIPLLTNSGEAREGSSVGTGRSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNVEGEDEGTPENSRCFSQKYRPMFFGELIGQNIVVQSLMNAVSRGRIAPVYLFQGPRGTGKTSTAKIFAAALNCASPDESKPCGYCRECTDVISGKSSDLLEVDGTNKRGIDKARYLLKRLSTGSSSASPQYTVFVIDECHLLPSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTVQSRCQKYLFNKIKDGDIVTRLRKISTQENLDVEADALDLIAINADGSLRDAETMLEQLSLLGKRITTTLVNELVGVVSDEKLLELLELAMSSDTVETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYAVIDTKPDDSFFGGRSLNESELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSTPSPDLTQSSSSRRQSCKTTEDDPSSVSRDITSCTHKSDPQHVPRKSAYTASQQKAVNDNFNHQKDISSKLEGFSLKSKPSNSPVIDDGSTVVSSDDLMVGNTMYRCIDSGKLSDIWVHCIEKCHSKTLRQLLHHHGKLVSVCEVEGVLVAYVAFGDADIKVRAERFLRSITNSMEMVLRRNVEVRIIQLADGEGENQVNLTGVKQGESMVGCEKEQRQCHMNGTESYSSMPPLLDRNLQSATASSDILGEGNGGRERRQDNPMHRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQNGVDPMESMDSTRFSSHQHWEDDPNNELKVLTLKNGRVPQKDQIGRKADRLPMSPSLLHDNSLATISGKDNPGYESGSGAGGCGFLCWNKSKPRRVIKVKGGTPVRGRRGASFTLFGDCGKQKKRERKR 1297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02735 1297 FunFam DNA polymerase III subunit gamma/tau 688 750 - -
Spst3g02735 1297 MobiDBLite consensus disorder prediction 445 462 - -
Spst3g02735 1297 Coils Coil 820 850 - -
Spst3g02735 1297 MobiDBLite consensus disorder prediction 864 909 - -
Spst3g02735 1297 Pfam DNA polymerase III subunits gamma and tau domain III 741 860 IPR022754 GO:0003887
Spst3g02735 1297 CDD AAA 526 684 - -
Spst3g02735 1297 FunFam DNA polymerase III subunit gamma/tau 508 686 - -
Spst3g02735 1297 MobiDBLite consensus disorder prediction 864 878 - -
Spst3g02735 1297 Gene3D - 689 750 - -
Spst3g02735 1297 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 515 929 - -
Spst3g02735 1297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 537 734 IPR027417 -
Spst3g02735 1297 MobiDBLite consensus disorder prediction 1270 1297 - -
Spst3g02735 1297 NCBIfam DNA polymerase III subunit gamma/tau 512 861 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Spst3g02735 1297 MobiDBLite consensus disorder prediction 438 464 - -
Spst3g02735 1297 MobiDBLite consensus disorder prediction 156 173 - -
Spst3g02735 1297 MobiDBLite consensus disorder prediction 141 183 - -
Spst3g02735 1297 Pfam DNA polymerase III, delta subunit 527 687 - -
Spst3g02735 1297 SMART AAA_5 544 694 IPR003593 GO:0016887
Spst3g02735 1297 CDD HLD_clamp_pol_III_gamma_tau 687 750 IPR045085 -
Spst3g02735 1297 SUPERFAMILY post-AAA+ oligomerization domain-like 758 859 IPR008921 GO:0003677|GO:0006260
Spst3g02735 1297 Gene3D - 504 685 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02735 Spst-Chr3 76946324 76957623 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02735 508 802 Core DNA Replication Machinery Family AT1G21690 25.000 1.18e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02735 - - gmx:100791561 2083.92