Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02732 ATGGAGCTTTCGAGTCAAGAAGGAGAAATCCCAATCCCAATAAACAGCACTACGTATGGTGGGGGACATGGTAATGGACACGGTCATGGTCTTATGATTCACCATGACCCTCCACACCACAACCACATTATCTCCTCCACGGCACCTTCAAACGGCACACCTACTATGCAGCAGGAGGATCATGGGTACAAGAAAGTGGTGAGGTACAGAGAATGCCTGAAGAACCATGCAGCGGCCATGGGAGGGAATGCCACTGATGGGTGTGGAGAGTTCATGCCAAGTGGAGAAGAAGGCACCATAGAGGCACTCAACTGCTCAGCCTGCCATTGCCACAGAAACTTCCACAGAAAGGAAGTGGAGGGTGAGCCCTCTTCATGTGACTACCACCCCTTCAACAGAAGAAGACTCATTCTAGGCCCTCACAAGAACCTCCTCCCTCCCGAGGCTCTTGGCTACCCTACAGGTAACATCCTTCCTTCTAGAAGTGTCCCGCCACACCAGATGATAATGCCCTACAGCATTGGTCACCTCCCTTCAGAATCTGATGAGCAAGAAGACGGCGGAGGAATGGTGCAGCCTAGATCCTCCCAGCTAGTGAAGAAAAGGTTCAGGACAAAGTTCACCCAGGAGCAGAAGGAGAAAATGCTCAACTTTGCAGAGAAGGTGGGGTGGAAAATCCAGAAGCAAGAGGAGTCTGTGGTGCAACAGTTCTGCCAAGAGATTGGGGTTAAGAGAAGAGTGCTCAAGGTTTGGATGCACAACAATAAGCACAATCTCGCCAAAAAGAACCCCCCTACTGCATCAGCTTAA 810 0.5062 MELSSQEGEIPIPINSTTYGGGHGNGHGHGLMIHHDPPHHNHIISSTAPSNGTPTMQQEDHGYKKVVRYRECLKNHAAAMGGNATDGCGEFMPSGEEGTIEALNCSACHCHRNFHRKEVEGEPSSCDYHPFNRRRLILGPHKNLLPPEALGYPTGNILPSRSVPPHQMIMPYSIGHLPSESDEQEDGGGMVQPRSSQLVKKRFRTKFTQEQKEKMLNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNPPTASA 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02732 269 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 54 259 - -
Spst3g02732 269 MobiDBLite consensus disorder prediction 178 197 - -
Spst3g02732 269 MobiDBLite consensus disorder prediction 1 22 - -
Spst3g02732 269 NCBIfam homeobox domain, ZF-HD class 200 256 IPR006455 -
Spst3g02732 269 Gene3D - 188 262 - -
Spst3g02732 269 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 69 118 IPR006456 -
Spst3g02732 269 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 68 119 IPR006456 -
Spst3g02732 269 Pfam ZF-HD protein dimerisation region 67 119 IPR006456 -
Spst3g02732 269 FunFam Zinc-finger homeodomain protein 2 190 261 - -
Spst3g02732 269 SUPERFAMILY Homeodomain-like 192 261 IPR009057 -
Spst3g02732 269 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02732 Spst-Chr3 76922895 76923704 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02732 1 263 ZF-HD Transcription Factor Family AT1G14440 51.361 9.31e-80 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Spst3g02732 ZF-HD_dimer 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02732 - - gmx:100805652 450.284