Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02724 ATGGCATTTTCTGCTTCCACTCACAAATCTGGCAGAAGTCATCCAGGGGCAATCAATGATGGTTTATACAAGGAATTGTGGCAGGCCTGTGCTGGTCCCCTTGTCAGTCTCCCTCGTGAAGGGGAGAGAGTTTATTACTTTCCACAAGGTCACATGGAACAGGACAAGCTGCGTGGGCATGGGATCTTAATTTTTGATCTTAAACTGCACATTGCAATTTTCAAGATGCATTTGCTTGAGGCATCAATGTATGAGGGATTGGAGCAGCAGATGCCTTCCTTTAATCTGCCTTCTAAAATATTATGTAAAGTGGTCAATGTTCACCTTCGGGCTGAATCCGAAACTGATGAAGTATATGCACAGATAACTCTGCTTCCTGAAGTAGATCAAAGTGAGGTGACCAGCCCTGATGATCCTCTGCCTGAATCTCCAAGGGTCAAGATCCATTCATTTTGCAAGACTCTTACCGCATCTGATACCAGTACCCATGGGGGTTTCTCTGTGCTTCGAAGACATGCAGATGATTGTCTGCCTCCGTTGGATATGTCTCAGCAACCACCATGGCAAGAATTGGTTGCAACTGATTTACACGGGAATGAATGGCATTTTAGACATATTTTTCGAGATTTGATGTTTATTTATACTGTCAGTAAGTTCCTGAATGAACAGAGTAATTTCCAGGGCAACCCAAGCGCCACTTACTTACCACTGGGTGGAGTGTCTTTGGGTGAAAATGGAGAGCTGCGAGTTGGGGTTAGGAGGGTCATGAGACAGCAAAGCAATGTGCCTTCTTCTGTTATATCTAGTCACAGTATGCATCTTGGTGTTCTGGCCACTGCATCTCATGCCATTGCCACTGGAACATTGTTTTCTGTGTTTTACAAGCCCAGAACAAGCCGGTCGGAGTTTATTGTCAGTGTCAACAAGTATCTGGAAGTTCATAGTCATAAACTCTCTGTTGGGATGAGATTCAAAATGAGATTTGAGGGTGACGAAATTCCTGAAAGAAGGTTCAGTGGCACAATTGTGGGTGTTGGAGATAATAAATCATCAGTGTGGCCTGATTCTGAGTGGCGATCATTAAAAGTGCAATGGGATGAACCATCATCAATTTTGCGCCCTGATAGAGTTTCTTCATGGGAATTGGAGCCACTTGTGTCTACCACTCCTGCAAACCCGCAGCCAACCCCAAGAAACAAGAGGGCACGGCCTCTCGTTCTACCTTCTACAATGCCTGATTCTTCTTTGCAAGGTGAGTTTGCTGGGTTGGTGGTACACAAATTCATTTCATCAATTATGCTGTTTTTCTACATTATCCACTTTCCTTGTACACCAGGCATGTGGAAATCATCAGTTGAATCTACACCTTTCTTCTATTGTGACCCTCAACATGGACGTGGCCTCTATCCATCACCCAAGTTCAATTCTTCTGCAACTAACTTTCTTGGTTTTAGTGGGAATAGCTTTGTGGGACCTCCTTCCAACAAATCAATATATTGGTCTAATAGGATGGAAAATTCCTTGGAATCTATTTCAGCTATAGCCCTTAAAGAAGCTGGAGAAAAGAGACAAGGCACTGGAAATGGCTGCAGACTCTTTGGGATTCAGCTACTTGAGAATTCTAATGCCGAAGGAAGTCTACAAACAGCGACTTTGTCTGGATGGGTGGGTGATGATAGGTCTGCTCCATCTTTAGATGCTGAATCTCAGCATTCGGAACCATCAAATGCCAATCGATCTGATATTCCTTCAGAAAGTTGTGATGCTGAAAAATCGTGCCTGCAATCTCCCCAGGAGTCACAAAGCAGGCAAATAAGGAGCTGTACAAAGGTTCACATGCAAGGAATGGCTGTTGGAAGGGCTGTGGATTTAACACGATTTGATGGATATAAGGATCTGCTCCGGAAATTGGAAGAGATGTTTGACATCAAGGCTGAGCTCTGTGGGTCCACAAAAAACTGGCAGGTTGTCTACACTGATAACGAAGATGATATGATGATGGTTGGAGACGATCCATGGGATGAGTTCTGTAGTGTTGTGAGGAAAATTTTCATCTACACGGTAGAGGAGGTAAAGAAGCTTTCCCCGAAAATAGGACTTCCAATGAATGAATTGAAAGCAAGCAAGCAGGATTCAGAAGCAATAGTCAATCCAGAGGAGCATTCGTCTAATGTGGGACTGAGCTGCTAA 2190 0.4388 MAFSASTHKSGRSHPGAINDGLYKELWQACAGPLVSLPREGERVYYFPQGHMEQDKLRGHGILIFDLKLHIAIFKMHLLEASMYEGLEQQMPSFNLPSKILCKVVNVHLRAESETDEVYAQITLLPEVDQSEVTSPDDPLPESPRVKIHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRDLMFIYTVSKFLNEQSNFQGNPSATYLPLGGVSLGENGELRVGVRRVMRQQSNVPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEVHSHKLSVGMRFKMRFEGDEIPERRFSGTIVGVGDNKSSVWPDSEWRSLKVQWDEPSSILRPDRVSSWELEPLVSTTPANPQPTPRNKRARPLVLPSTMPDSSLQGEFAGLVVHKFISSIMLFFYIIHFPCTPGMWKSSVESTPFFYCDPQHGRGLYPSPKFNSSATNFLGFSGNSFVGPPSNKSIYWSNRMENSLESISAIALKEAGEKRQGTGNGCRLFGIQLLENSNAEGSLQTATLSGWVGDDRSAPSLDAESQHSEPSNANRSDIPSESCDAEKSCLQSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYKDLLRKLEEMFDIKAELCGSTKNWQVVYTDNEDDMMMVGDDPWDEFCSVVRKIFIYTVEEVKKLSPKIGLPMNELKASKQDSEAIVNPEEHSSNVGLSC 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02724 729 ProSiteProfiles PB1 domain profile. 606 699 IPR000270 GO:0005515
Spst3g02724 729 FunFam Auxin response factor 317 389 - -
Spst3g02724 729 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 695 IPR044835 GO:0003677|GO:0006355|GO:0009725
Spst3g02724 729 SMART B3_2 151 256 IPR003340 GO:0003677
Spst3g02724 729 Gene3D - 317 390 - -
Spst3g02724 729 FunFam Auxin response factor 601 695 - -
Spst3g02724 729 Gene3D - 601 695 - -
Spst3g02724 729 MobiDBLite consensus disorder prediction 558 599 - -
Spst3g02724 729 MobiDBLite consensus disorder prediction 709 729 - -
Spst3g02724 729 Pfam Auxin response factor 280 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Spst3g02724 729 CDD B3_DNA 149 209 IPR003340 GO:0003677
Spst3g02724 729 Pfam AUX/IAA family 598 696 IPR033389 -
Spst3g02724 729 SUPERFAMILY CAD & PB1 domains 608 683 - -
Spst3g02724 729 MobiDBLite consensus disorder prediction 567 599 - -
Spst3g02724 729 SUPERFAMILY DNA-binding pseudobarrel domain 147 283 IPR015300 -
Spst3g02724 729 Gene3D - 148 256 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02724 Spst-Chr3 76856395 76864262 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02724 3 728 B3 DNA Binding Superfamily AT1G59750 59.511 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02724 K14486 - gmx:100815450 1138.25