Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02695 ATGGATTACGCTCGAGATGGGAACGTGGTGCAAATAATCACCGGGGGTGGCGGAGGAGGAGAGAGCTGGTCGGGCGATCAAGCCGATTGGGCGACTGAGGATGAGTACCGGTTTTGGAACAACAACAACAACGGAGACGCGGAATCGACGCCTTCGAACTCGAATTATGAGTCGCGGTCGGAGCCGCCGAGCAAGAAGTCCCGGAATTCGCAGGATGGGAACTCAAACCGGTCAAAGGCTATAGGGAAAATGTTCTTCAAGACGAAGCTGTGTTGCAAGTTCAGGGCAGGGACGTGCCCTTACATCACCAACTGCAATTTCGCCCACAGCATTGAGGAGCTGCGGCGCCCGCCCCCAAACTGGCAGGAGATTGTGGCGGCACACGAGGAGGAGAAGGCAGTGATGGCAGAGCCAAGGGAGGAGTTTCAGATTCCCACTGTGGGGTCTTCCACCTTTGCAGGGGATATGATGCAGAGGTCCTACAAGGGAAGGCATTGTAAGAAGTTTTACACTGAGGAAGGGTGCCCCTATGGGGATAGTTGCACCTTCCTTCATGATGAGCAATCAAAGAACCGAGAGAGTGTTGCTATAAGTTTAGGCCCAGGGGGTTATGGTGGTGGTGGTGGTGGTAGTGGTGGCGGGGGTGGTGGTGGTGGGGGGTGGCGGTGGTGGAAATGGTAG 681 0.5565 MDYARDGNVVQIITGGGGGGESWSGDQADWATEDEYRFWNNNNNGDAESTPSNSNYESRSEPPSKKSRNSQDGNSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVMAEPREEFQIPTVGSSTFAGDMMQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGGSGGGGGGGGGWRWWKW 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02695 226 Pfam CCCH-type zinc finger 164 186 IPR041367 -
Spst3g02695 226 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 110 IPR000571 GO:0046872
Spst3g02695 226 PANTHER CCCH ZINC FINGER/TIS11-RELATED 48 190 IPR045877 GO:0003729
Spst3g02695 226 ProSiteProfiles Zinc finger C3H1-type profile. 160 188 IPR000571 GO:0046872
Spst3g02695 226 MobiDBLite consensus disorder prediction 1 78 - -
Spst3g02695 226 FunFam Zinc finger CCCH domain-containing protein 81 117 - -
Spst3g02695 226 Gene3D - 80 116 - -
Spst3g02695 226 FunFam Zinc finger, CCCH-type 154 192 - -
Spst3g02695 226 Gene3D - 153 199 - -
Spst3g02695 226 MobiDBLite consensus disorder prediction 36 60 - -
Spst3g02695 226 SUPERFAMILY CCCH zinc finger 83 116 IPR036855 GO:0046872
Spst3g02695 226 SMART c3hfinal6 160 187 IPR000571 GO:0046872
Spst3g02695 226 SMART c3hfinal6 85 111 IPR000571 GO:0046872
Spst3g02695 226 SUPERFAMILY CCCH zinc finger 159 188 IPR036855 GO:0046872
Spst3g02695 226 ProSiteProfiles Zinc finger C3H1-type profile. 85 112 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02695 Spst-Chr3 76412622 76413302 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst3g02695 zf-CCCH 1.1e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02695 - - gmx:102665148 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02695 3 76412622 76413302 Spst3g02695 3 76412622 76413302 ECH