Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02691 ATGGCTGCTGCCGGCAACCCCAGAACTTGGATTCCATATATGAACAGCAAAGACTGTTCAGAAGGATTTTGCAGCTTGTATTGTCCACAGTGGTGTTACATAGTGTATCCTCCTCCTCCACCCTTTGAGTACCCTGATGATGATTCAAGTCCAAATTTCTCCCCTCTTGTCATTGCAATCATTGGGATCTTGGCCACTGCTTTCCTTCTGGTGAGTTACTACACTCTAATATCCAAGTACTGCAGCCCCAGAGAGTCTGCACGCAGAGACCCAAATGATGAGTTGCAAGGCACTCACAATCCCTCTCTCCACGAACCATGGAATGCTTCAACCACAGGCCTTGACGAGGCTCTGATCAAATCCATTGCAGTTTTCAAGTACAAGAAAGGGGTTGGTGGTTCCGTTGGAGTCACGGATTGTTCAGTTTGCCTCAGCGAGTTTGAAGACGATGAAAGTGTTAGATTCTTGCCAAAGTGCAGCCACGTTTTCCATGTCCCTTGCATTGACACGTGGCTCAAGTCTCACTCTAGCTGCCCCTTGTGTCGTGCTGCCATATTCACTTTCAACGCTTCTGTTCCTCGGGCTCATACCCCAGAGGAAGAGATGCCTTCTTCAAGGAATAATGAAACTTCTTCCGAGAATGAAAGTGTTGGAAGTGGCAATGAGTATGGAGTGGAAGAAGAAAGCATACACCATGCTAGGGCTTATCCAAAGCCTGCATTGCGTGCTTTCAGTGACTTAAGTAGCTTTGAGGGCAGGCACAGAGTGATTGAGATAAGAGATGAAGTGAGTGAATCCGTTGGTAGGTCAGTGTCTATGGACCATTCGTTTCAAAGTGGTGTTTCTGTTGCTGATGTGTTGCAAATGCATGAAGAGGAAGATTCCCAAGTGGAAGGGTGTTCTACTAATGAACCTGGTCCTTCAAAGAGATCACACAGAGAGAGCTACAGAACAAGGGTGTTGCATTGTGTTTTGAGTCCAATTGCAATGAAGAGATCGTTTCCCAGTGACAGATATTCAGTCAGCAAAAGTGGCAGAGCAAGGCAGAGAACTATACCCATCTGA 1065 0.4648 MAAAGNPRTWIPYMNSKDCSEGFCSLYCPQWCYIVYPPPPPFEYPDDDSSPNFSPLVIAIIGILATAFLLVSYYTLISKYCSPRESARRDPNDELQGTHNPSLHEPWNASTTGLDEALIKSIAVFKYKKGVGGSVGVTDCSVCLSEFEDDESVRFLPKCSHVFHVPCIDTWLKSHSSCPLCRAAIFTFNASVPRAHTPEEEMPSSRNNETSSENESVGSGNEYGVEEESIHHARAYPKPALRAFSDLSSFEGRHRVIEIRDEVSESVGRSVSMDHSFQSGVSVADVLQMHEEEDSQVEGCSTNEPGPSKRSHRESYRTRVLHCVLSPIAMKRSFPSDRYSVSKSGRARQRTIPI 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02691 354 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Spst3g02691 354 PANTHER RING-H2 FINGER PROTEIN ATL16 41 313 IPR044600 GO:0016567|GO:0016740
Spst3g02691 354 Pfam Ring finger domain 139 182 IPR001841 -
Spst3g02691 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 186 IPR013083 -
Spst3g02691 354 SMART ring_2 140 181 IPR001841 -
Spst3g02691 354 MobiDBLite consensus disorder prediction 293 315 - -
Spst3g02691 354 MobiDBLite consensus disorder prediction 196 222 - -
Spst3g02691 354 MobiDBLite consensus disorder prediction 204 219 - -
Spst3g02691 354 CDD RING-H2_EL5-like 139 182 - -
Spst3g02691 354 SUPERFAMILY RING/U-box 139 188 - -
Spst3g02691 354 MobiDBLite consensus disorder prediction 85 108 - -
Spst3g02691 354 FunFam E3 ubiquitin-protein ligase ATL6 103 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02691 Spst-Chr3 76389533 76390597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02691 1 333 C3H Transcription Factor Family AT3G03550 38.400 1.16e-64 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02691 - - vun:114176645 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02691 3 76389533 76390597 Spst3g02691 3 76389533 76390597 ECH
Spst3g02691 3 76389533 76390597 Spst3g02691 3 76389533 76390597 PCT