Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02685 ATGACCGTCATACCAAAAGGTGCTTTAGTGATCTTTGATGGTCTGAACAAGGAACTCTGTGTGGGGATCCATCTTGTTGTTATTCACATTATTCACCTTGGTCGGAAATCTGGGTGGTTGGTTCACCTTGGTCGGAAATCTGGGTGGTTGTTTTGCGCTTTCTATTTTAAGCAAGCAGCTTCATCCTTGATGATGGCCTATGGTGGAGATGAATTCGTTCATCCTGACAATGCGGTATCAGTTTCCCTCACTCGGTCCGGTTACCCTCGAATCATTTTGTCTCATCATAGGCGTATGATTCTGAAGAAGAATGAAAAAGCTGACATGCTGCACATATTGATCTTCTCTAGAGCTTCAATGGAGGCTGCTGTGAGAACTACAATGGAGGATGACATGAGAACTTTGCTTGTGATCACGGGTTATAAAAATAGGGTTGAATCCCTGTCTCATTGGTTGTGTTTCTCCTCTGCGAATCTCCCTTCGAAAGACTCAACAAGTGGTATCCGAATGTTGATCGACAGTGGGTGTTTAAGAGTGGTGCTTGTGTGTTATGCGTGGTATCCGAATGTTGATCGGCAGAGTGGTGCTTGCGTCGAAAGTATTCTCGATAAGGGTGTTATGCGCAGGAAACTCAAGGCCAAGTCTGAAAACAAGATGTGTTTTGATTGCAATGCGAAGAACCCTACCTGGGCGTCCGTCACATATGGGATCTTCCTCTGCATCGATTGCTCCGCCGTTCATCGTAGTCTCGGCGTGCACATCAGCTTCGTGAGGTCTACAAATTTAGACTCATGGAGTCCCGAGCAACTAAAAACGATGAGCTTTGGAGGTAACAATCGAGCACAAGTTTTCTTTAAGCAACATGGTTGGAGTGATGGTGGCAAAATAGAGGCTAAGTACACATCCAGAGCTGCAGATTTGTATAGGCAAATTCTTTCAAAGGAGGTGGCTAAAAGTATGGCTGAAGATGGAGGCTTGCCTTCATCACCTGTCGCTTCTCATGCTCCTCATGGTGTTAATGGGCTTCCTGAAGTCAGGACCAATGAAGTGCCAAAAGAAAACACTCTGGAGAAGCCTGAAAAGCCTGAGAGCACTTCTTCACCCAGGGCTTCACACACAGTAATTTCAAGTACTGTCAAGAAACCTATTGGTGCTAAAAAGGTTGGGAAGAGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAGCCAAGTGAGTCTCTCTATGAGCAGAAGCCGGAGGAACCCCCTGCTCCTGTTACATCCTCAACAAACAATATGCCTACTGGACCATCTTTGACATCTCGGTTTGAGTATGTAGAAAATGTCCAATCATCTGAGTTGAACACTGGAGCTTCACATGTGATGAGTCATGTGTCTCCACCAAAGTCTTCAAGCTTCTTTGCAGACTTTGGAATGGATGGTGGCTTTCCGAAGAAATCTGGTCCTAGCTCCTCCAAAGTGCAAATTGAGGAATCTGACGAGGCAAGAAGGAAGTTCTCAAATGCTAAATCTATTTCATCATCCCAATTTTTTGGAGATCAGAGCAAAGCTTCGGATTTGGATTCTCAAGCTACTTTGTCCAAGTTTTCGGGTTCAACTGCCATCTCCAGTGCTGATCTTTTTGGTGACTCAAGAGACAACGCCGTTGATATTAGTGCCAGTGACCTCCTCAATCGATTATCTTTCCAGGCACAGCAGGACCTCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGAAGCTCACCTCATTGGCCTCCACATTGATGACAGATCTTCAGGACAGAATTCTCTAA 1797 0.453 MTVIPKGALVIFDGLNKELCVGIHLVVIHIIHLGRKSGWLVHLGRKSGWLFCAFYFKQAASSLMMAYGGDEFVHPDNAVSVSLTRSGYPRIILSHHRRMILKKNEKADMLHILIFSRASMEAAVRTTMEDDMRTLLVITGYKNRVESLSHWLCFSSANLPSKDSTSGIRMLIDSGCLRVVLVCYAWYPNVDRQSGACVESILDKGVMRRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKTMSFGGNNRAQVFFKQHGWSDGGKIEAKYTSRAADLYRQILSKEVAKSMAEDGGLPSSPVASHAPHGVNGLPEVRTNEVPKENTLEKPEKPESTSSPRASHTVISSTVKKPIGAKKVGKSGGLGARKLTKKPSESLYEQKPEEPPAPVTSSTNNMPTGPSLTSRFEYVENVQSSELNTGASHVMSHVSPPKSSSFFADFGMDGGFPKKSGPSSSKVQIEESDEARRKFSNAKSISSSQFFGDQSKASDLDSQATLSKFSGSTAISSADLFGDSRDNAVDISASDLLNRLSFQAQQDLSSLKNIAGETGKKLTSLASTLMTDLQDRIL 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02685 598 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 205 598 - -
Spst3g02685 598 SMART arf_gap_3 205 321 IPR001164 GO:0005096
Spst3g02685 598 Gene3D Arf GTPase activating protein 202 328 IPR038508 -
Spst3g02685 598 MobiDBLite consensus disorder prediction 321 432 - -
Spst3g02685 598 PRINTS HIV Rev interacting protein signature 217 236 IPR001164 GO:0005096
Spst3g02685 598 PRINTS HIV Rev interacting protein signature 257 278 IPR001164 GO:0005096
Spst3g02685 598 PRINTS HIV Rev interacting protein signature 236 253 IPR001164 GO:0005096
Spst3g02685 598 CDD ArfGap_ArfGap2_3_like 209 318 - -
Spst3g02685 598 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 196 332 - -
Spst3g02685 598 ProSiteProfiles ARF GTPase-activating proteins domain profile. 205 323 IPR001164 GO:0005096
Spst3g02685 598 MobiDBLite consensus disorder prediction 416 432 - -
Spst3g02685 598 Pfam Putative GTPase activating protein for Arf 209 299 IPR001164 GO:0005096
Spst3g02685 598 SUPERFAMILY ArfGap/RecO-like zinc finger 209 320 IPR037278 -
Spst3g02685 598 MobiDBLite consensus disorder prediction 350 365 - -
Spst3g02685 598 MobiDBLite consensus disorder prediction 477 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02685 Spst-Chr3 76290612 76304737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02685 209 286 C2H2 Transcription Factor Family AT4G21160 46.835 1.07e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02685 K12493 K11855 gmx:100785169 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02685 3 76290612 76304737 Spst3g02685 3 76290612 76304737 ECH
Spst3g02685 3 76290612 76304737 Spst3g02685 3 76290612 76304737 PCT