Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02683 ATGACGGAGTACAGGTCGCCGCCGACTATGAATCTCTGGACTGACGACAACTCTTCCGTCATGGAGGCCTTCACGAGCTCATCCGACCTCTCCTCCCTGTGGCTTCCTACGCCGCAATCCGCTGCCTCAACCACCACTCCGGGAACCGACAACGCCAGAGCCCCGCCGCCACCTCCCCCACCCCAGTCCCATTCCCTCCTCAACCAGGAGACCCTACAACAGCGCCTGCAGACGTTGATCGAAGGCGCTAGGGAGAGCTGGACCTATGCTATTTTCTGGCAGACTTCTTATGACTACTCCTCCGGCACTACCCTTCTTGGTTGGGGCGACGGCTACTACAAGGGCGAGGAGGACAAAGGAAAAGGCAAAGTCCCCAAAGCGACGTCGTCTTCGGAGCAGGACCACCGCAAGAAGGTTCTCCGGGAACTCAATTCCTTGATTTCCGGTCCTTCCGCTTCCGCTGATGACGTAGACGAAGAGGTAACTGACACTGAATGGTTTTTTCTAGTGTCCATGACTCAGTCTTTTTTCAACGGCAGCGGCCTCCCGGGCCAGTCATTTTTTAACTCCAGCCCGGTTTGGGTCGCCGGCGCAGACCGGTTATCCGAATCGGTCTGCGAGCGGGCCCGCCAGAGCGAGGTATTTGGACTTCAGACTCTGGTCTGCATACCCTCCGCAAAGGGCGTCGTTGAGCTGGCCTCCACGGAGGTGATTTTCCAGAACTCTGATCTGATGAACAAAGTGCGGGATTTGTTCAACTTCAACAACCCAGAGGCTGGTTCATGGCCGTTGAATTGTGTTGCCACCGATCAGGGAGAGAACGACCCTTCCTCGCTCTGGCTCAATCCTTTTTCCAGTCTGGAAATAAAGGACTCCTCTAACGCCGTTGCTCCCGCTTCAGGGAATGCAACAGCTGGCAAAACGACGCCGTTCGAAACCCCTGGTTCAAGTACTCTAACGGAAACCCCTAGTGCTGTCACCGCTGCTGCTCGCGTCCCCAACCCGAAGAGCCAGGGTTTATTCCCGAGGGAATTGAACTTCTCCAACTCCTTAAAACCCGTATCTGGTGAAATTCTGAGCTTCGGAGAGAGCAAGAAGAGCTCTTACAATGGGAGTTACTTCCCCGGTGTTGTAGCTGAGGAGACCAACAAGAAGAGAAGGTCTCCTGTTTCTCGCAGTAGCATTGACGATGGGATGCTGTCCTTCACCTCCGGCATTATCCTGCCGGCCTCCAATGTAAAATTAGGCGGTGGTGGTTCTGGAGGCGGTGATTCCGATCACTCGGATCTGGAAGCTTCCGTGGTGAAAGAAGCGGACAGCAGGGTGGTGGAACCCGAGAAACGGCCCCGGAAGAGGGGACGAAAGCCGGCGAACGGCAGAGATGAGCCGCTGAATCACGTGGAAGCGGAGAGGCAGAGGAGAGAAAAGCTGAATCAAAGGTTCTACGCGCTTCGTGCGGTGGTTCCCAACGTGTCGAAGATGGACAAGGCATCACTCTTGGGCGATGCCATATCCTACATAAACGAGCTGAAGTCGAAGCTGAATGGGCTCGAATCGGAGAAAGGGGAATTGGAAAAGCAATTGGATTCGGCAAAGAAGGAGCTTGACCTGGCAACTAAAACCCCTTCTTCTCCTCCTCCACCTGGACCACCTCCATCTGATAAAGAAGAGAAGAAAACGACGAGCAAGCTCATTGATTTGGAGGTAGAGGTGAAGATCATAGGCTGGGACGCGATGATAAGAATCCAATGCAGCAAGAAGAACCACCCTGCGGCAAGGTTGATGGCGGCGTTGAAGGACCTGGACCTGGACGTGCATCACGCCAGCGTGTCCGTGGTGAATGATTTGATGATCCAACAGGCCACGGTCAACATGGGAAACCGATTTTACACGCAAGAACAGCTCCTGTCGGCGCTCTCGTCCAAAATAGACGATGCACGATAA 1944 0.5453 MTEYRSPPTMNLWTDDNSSVMEAFTSSSDLSSLWLPTPQSAASTTTPGTDNARAPPPPPPPQSHSLLNQETLQQRLQTLIEGARESWTYAIFWQTSYDYSSGTTLLGWGDGYYKGEEDKGKGKVPKATSSSEQDHRKKVLRELNSLISGPSASADDVDEEVTDTEWFFLVSMTQSFFNGSGLPGQSFFNSSPVWVAGADRLSESVCERARQSEVFGLQTLVCIPSAKGVVELASTEVIFQNSDLMNKVRDLFNFNNPEAGSWPLNCVATDQGENDPSSLWLNPFSSLEIKDSSNAVAPASGNATAGKTTPFETPGSSTLTETPSAVTAAARVPNPKSQGLFPRELNFSNSLKPVSGEILSFGESKKSSYNGSYFPGVVAEETNKKRRSPVSRSSIDDGMLSFTSGIILPASNVKLGGGGSGGGDSDHSDLEASVVKEADSRVVEPEKRPRKRGRKPANGRDEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLNGLESEKGELEKQLDSAKKELDLATKTPSSPPPPGPPPSDKEEKKTTSKLIDLEVEVKIIGWDAMIRIQCSKKNHPAARLMAALKDLDLDVHHASVSVVNDLMIQQATVNMGNRFYTQEQLLSALSSKIDDAR 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02683 647 Gene3D - 454 540 IPR036638 GO:0046983
Spst3g02683 647 PANTHER MYC 45 642 IPR045084 GO:0003700|GO:0006355
Spst3g02683 647 MobiDBLite consensus disorder prediction 537 561 - -
Spst3g02683 647 MobiDBLite consensus disorder prediction 417 469 - -
Spst3g02683 647 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 461 510 IPR011598 GO:0046983
Spst3g02683 647 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 72 252 IPR025610 -
Spst3g02683 647 Pfam Helix-loop-helix DNA-binding domain 465 510 IPR011598 GO:0046983
Spst3g02683 647 MobiDBLite consensus disorder prediction 295 320 - -
Spst3g02683 647 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 464 529 IPR036638 GO:0046983
Spst3g02683 647 MobiDBLite consensus disorder prediction 116 135 - -
Spst3g02683 647 FunFam Transcription factor bHLH13 454 528 - -
Spst3g02683 647 CDD bHLH_AtAIB_like 458 534 - -
Spst3g02683 647 SMART finulus 467 516 IPR011598 GO:0046983
Spst3g02683 647 Coils Coil 507 541 - -
Spst3g02683 647 MobiDBLite consensus disorder prediction 429 469 - -
Spst3g02683 647 MobiDBLite consensus disorder prediction 30 65 - -
Spst3g02683 647 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02683 Spst-Chr3 76253666 76255609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02683 1 643 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 56.777 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g02683 bHLH-MYC_N 6.5e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02683 K13422 - gmx:100790854 974.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02683 3 76253666 76255609 Spst3g02683 3 76253666 76255609 ECH