Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02671 ATGTCTCCGCCACTGCTGGTTACTGAAGATGAAGGGCAGAGCAATGCCTCAATGGTAGTTGCTGCATCTTCACCATCCTTGGAGTGTTTCCCTCCAAACGAGGCTAGATTGAAAGAACGCAATTACCTGAGATTGTCAGATTGCTCTTCGGTGGACAGTTCTACTGTCCCAAGCTTGTCTGGTGAGAAAAAGAACCTGATTTTGAAGGCTACCGAGTTGAGGCTGGGCCTTCCTGGATCCCAGTCACCTGAAAGGGATCAAGATCTTTTCCCATTGACCTCAACAAAACTTGACGAGAAACCACTGTTCCCTTTGCTTCCTACAAAGGATGGAATCTGCACTTTGTCTCAGAAAACTGTGGTCTCAGGCAACAAGAGAGGTTTTGCTGACACAATAGACACTGAGTTTCCTGGCAATGCAGGAATAAACATGATGCTGTCACCTAAACCTTCTGGGACTCAGCCAACCACAGTGAAAGAAATACCAAACAAGGTGTTACAAGAGCGTCCTTCTGCAGCAAATGGAACTGGTCTTAATCATACAGGAGCTTCTATCAGTGGCAGTGGACCTGCTTCTAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCATTGGCCACCACTTCAAAGAACAATGATGAGGTAGATGGAAAACCAGGTCTAGCCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTGAGGAAGGTAGATCTAAGAAATTATACAACGTACCAGGAACTGTCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTCACTCTAGGTCAATGTGGTGGTTCCCATGGAGTGTCAGGAAGAGAAATGTTGAGTGAGAGCAAGCTGAAGGACCTCCTGCATGGTTCGGAATACGTACTCACTTATGAAGATAAAGATGGTGACTGGATGCTTGTTGGAGATGTACCATGGGATATGTTCATTGACACATGCAAAAGGCTTAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGTAGCGGTGCCCGGTTTTTCTATTATTCGCAGCTCCCAGGGCCATGGAAAAATCCAGGAGCAGGAGCTAGTTGGTATTGTTGACTGCGTTTTGTCTGCTATACTGAAGTTGCTGGATATGATAAAGGTGTGGAAAGAGAACTATGGTATAAATCTGAATGCCGGGTTTTGA 1182 0.4552 MSPPLLVTEDEGQSNASMVVAASSPSLECFPPNEARLKERNYLRLSDCSSVDSSTVPSLSGEKKNLILKATELRLGLPGSQSPERDQDLFPLTSTKLDEKPLFPLLPTKDGICTLSQKTVVSGNKRGFADTIDTEFPGNAGINMMLSPKPSGTQPTTVKEIPNKVLQERPSAANGTGLNHTGASISGSGPASKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGLAALFVKVSMDGAPYLRKVDLRNYTTYQELSSALEKMFSCFTLGQCGGSHGVSGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFIDTCKRLKIMKGSDAIGLVAVPGFSIIRSSQGHGKIQEQELVGIVDCVLSAILKLLDMIKVWKENYGINLNAGF 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02671 393 MobiDBLite consensus disorder prediction 170 195 - -
Spst3g02671 393 MobiDBLite consensus disorder prediction 170 191 - -
Spst3g02671 393 FunFam Auxin-responsive protein 223 341 - -
Spst3g02671 393 Pfam AUX/IAA family 71 338 IPR033389 -
Spst3g02671 393 Gene3D - 225 342 - -
Spst3g02671 393 SUPERFAMILY CAD & PB1 domains 228 330 - -
Spst3g02671 393 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 68 336 IPR003311 GO:0005634|GO:0006355
Spst3g02671 393 ProSiteProfiles PB1 domain profile. 228 333 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02671 Spst-Chr3 76153759 76156771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02671 242 329 B3 DNA Binding Superfamily AT1G19220 31.818 3.82e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Spst3g02671 AUX_IAA 2.3e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02671 K14484 - gmx:100789251 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02671 3 76153759 76156771 Spst3g02671 3 76153759 76156771 ECH
Spst3g02671 3 76153759 76156771 Spst3g02671 3 76153759 76156771 PCT