Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02668 ATGGAGCTTTCTCAGCTTGGTTTCCTAGATGAATTAGTAGCTCCGAGAAGAGAGACATGGAATGCTTCTTCCACTGGGTTCTGTGAGCTATTGTCTAATGGTTGGAGTTTTGACACTTTTCTTGAGAATCCATCTATGGCCACCTCAAACTCCCTATTTGGTGCATTTTCAGCACCAATAGACCGCAGATTTGAATGCCCTTACAGCAATGAAGTAGCAGCATACCCATTTGCTGATGGGTTCACAATGCCATTGCCAGAGCTTGACCCTGTGAATGATGATCCCCCACTTTCACTTCCACCGGATGAAAAGATAGGCTTTCATGAGAAGAACAACAACATTGAAGAAACCAAGAGTGTCTGCAAAGTTGAGGAACAAGGCACAGAGATTCCACTCTTTAACATAGGCGTGTGTGATGATGGAGACAGAAAACCCAAGTCCAAAAAGCTAGAAGGACAGCCCTCAAAGAATCTCATGGCAGAAAGAAGAAGAAGAAAGCGTCTCAATGACCGTCTTTCCATGCTAAGGTCAATCGTCCCCAAGATCAGCAAGATGGACAGAACCTCTATTCTTGGGGATACCATTGACTACATGAAAGAGCTGTTGGACAGGATTGGTAAGTTGCAAGAGGAAGAGGTGGAAGAGGGCACAGGTCAGATTAATCTGTTGGGAATTTCAAAGGAACAACTCAAGCCAAACGAAGCAACATTTGATGTTGAGAGGAGAGACCAGGACACTAGGATCAGCATTTGCTGTGCCACAAAGCCTGGATTGCTACTATCAACCGTCAATACCTTAGAAGCATTAGGCCTTGAGATTCAGCAATGTGTTATAAGCAGCTTCAATGACTTTTCAATGGAAGCATCTTGTTCTGAGGTACCTGAACAGAGAAATTGCATTAGCCCTGAAGAGATAAAGCAGTCACTATTCAGAACTGCAGGGTTTGGTGGCCAAAGTCTCTAG 963 0.4424 MELSQLGFLDELVAPRRETWNASSTGFCELLSNGWSFDTFLENPSMATSNSLFGAFSAPIDRRFECPYSNEVAAYPFADGFTMPLPELDPVNDDPPLSLPPDEKIGFHEKNNNIEETKSVCKVEEQGTEIPLFNIGVCDDGDRKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLDRIGKLQEEEVEEGTGQINLLGISKEQLKPNEATFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIQQCVISSFNDFSMEASCSEVPEQRNCISPEEIKQSLFRTAGFGGQSL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02668 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
Spst3g02668 320 Pfam Helix-loop-helix DNA-binding domain 158 201 IPR011598 GO:0046983
Spst3g02668 320 CDD ACT_UUR-ACR-like 246 286 - -
Spst3g02668 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 212 IPR036638 GO:0046983
Spst3g02668 320 SMART finulus 158 207 IPR011598 GO:0046983
Spst3g02668 320 Gene3D - 141 202 IPR036638 GO:0046983
Spst3g02668 320 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 125 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02668 Spst-Chr3 76096383 76097718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02668 76 320 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 52.988 5.23e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g02668 HLH 6.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02668 - - gmx:100790319 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02668 3 76096383 76097718 Spst3g02668 3 76096383 76097718 PCT