Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02654 ATGTTCTTTGTTCACTACAACAACATCACGCTCATTTTCTCCCTCTCTGCCATGGCTTTCTTCACCTCTTGTTCATGCTCTAATCAAACCCAAAAGCGAACCTCTTTCTTCATATTTATCATCTTCTTCTTCTTCTTCTTCACTTTGTTTCATAACACTGTAGAGTCCGTTTCCTTCGACTTTTCCAACTTCCAGCAGTCAAACATAAACAACCTAATAAACTTCACGGGTGATGCTTTTTCCTCAAACGGTGTTCTTCAGCTCACCAGAAACCAACTCGATGGTCCCATCACTAGCAGCGTTGGTCAAGCCTCGTATGAACAACCAGTGAGACTTTGGGATCTAACAACAAAGAAGCTCACCGATTTCACAACCCATTTCTCTTTTGTCATGAAAGCTGTGAACCAGTCACGAGTTGGTGATGGCTTAGCCTTCTTCCTTGCACCCTTTGATTCTTCCATCCCCAACAATTCCGCTGGTGGGTACCTTGGCTTGTTCAGCAAGGATACCGCATTGGACACTATGAAAAATCAGTTAGTGGCAGTTGAGTTCGATAGTTTCAAGAACGAATGGGATCCGAGCTCTGATCACGTAGGGATCAATGTCAATTCCATCCAATCAGTTGCAAACGTTACTTGGAATAGCAACATTAAGAACGGGTCAGTTGCTAACGCTTGGATATGGTACAACTCCACATCCAAGAATCTCTCTGTCTTCCTTACTTATGCTAATAATCCAACCTTCAATGGCAGTTCTAGTCTTTCTTACGTTATTGATTTGAGGGACGTGTTGCCAGAGTTTGTTAGAATAGGCTTTTCTGCAGCAACGGGTCAATGGGTTGAGATACACAACATTTTGCTTTGGTCATTCAGTTCAACCTTGGATGGGGATGGTGGGAAAAAGGTCAAGGTTGGTTTAGTGGTTGGTATAAGTGTTGGTTCGGGTGTTTTAGCTTGTGTTGTTGGTCTATTATGGTTTACCTTTTGGAGAAGGAGAAATAGACTAAGGGGTGTAAACGAGGACATCTTAGGAGTTGATGCTTCTATAGATGATGAGTTTGAGAGAGGGACTGGTCCAAAGAGGTTCACCTATCGGGATCTAATCAATGCAACCAACAACTTTGCTGAAGAAGGGAAGCTAGGAGAAGGAGGGTTTGGAGGGGTTTACAAAGGATTCATTATTGATTCCAACCTTGAAGTGGCAGTGAAGAGGATTTCAAAAGGGTCAAAGCAAGGGAAAAAGGAGTACATATCAGAAGTGAGAGTTATCAGCCGGCTGAGACATAGAAACTTGGTTCAACTCATAGGGTGGTGCCATGAACAAGGTGAACTCCTTCTTGTTTATGAATTCATGCCTAATGGAAGCCTTGATTCTCATCTATTTGGAAATAGAGTCATGCTTTCGTGGGTGGTGAGATACAAAGTGGCCTTAGGTTTAGCATCCGCCCTTCTTTATCTTCATGAAGAGTGGGAACAGTGTGTGGTCCATAGAGATATCAAGTCAAGTAATGTCATGTTGGATGTTAATTTCAATGCCAAGCTTGGTGACTTTGGTCTTGCAAGGCTAGTAGACCATGAACTAGGCTCACAAACCACTGTTTTGGCAGGAACCATGGGATACCTAGCCCCAGAGTGTGTGACCACAGGGAAATCAAGCAAGGAATCTGATGTGTACAGCTTTGGTGTTGTGGCACTTGAGATCACATGTGGTAGAAAACCAGTGGAGGTGAAAGAAGAGCCTGGTAAAGTTAGGCTTGTGGAGTGGGTGTGGAGCCTTTATGGAAAAGGGAAACTACTAGAAGCTGCTGATGAGAAATTAAATAGGGAATTTGAAGAACAACAAATGGAATGCTTGATGGTTGTGGGGTTGTGGTGTTGTCACCCTGATCATACCATGAGGCCCTCCATTAGGCAAGTGATAAGTGTGCTTAACTTTGAAGCCCCTTTGCCAAGTCTTCCATCAAAGTTGCCAGTGCCGATGTACTTTGCACCTCCCATGGAGACGTGCGAATTCTCCTACACTTCATCTGGTGCTACTAACACAACCAAAGAATCGTTCCCATACTCAACAACGTCCACAGGGTCCGGAAAGTCTCTATTATAG 2103 0.4365 MFFVHYNNITLIFSLSAMAFFTSCSCSNQTQKRTSFFIFIIFFFFFFTLFHNTVESVSFDFSNFQQSNINNLINFTGDAFSSNGVLQLTRNQLDGPITSSVGQASYEQPVRLWDLTTKKLTDFTTHFSFVMKAVNQSRVGDGLAFFLAPFDSSIPNNSAGGYLGLFSKDTALDTMKNQLVAVEFDSFKNEWDPSSDHVGINVNSIQSVANVTWNSNIKNGSVANAWIWYNSTSKNLSVFLTYANNPTFNGSSSLSYVIDLRDVLPEFVRIGFSAATGQWVEIHNILLWSFSSTLDGDGGKKVKVGLVVGISVGSGVLACVVGLLWFTFWRRRNRLRGVNEDILGVDASIDDEFERGTGPKRFTYRDLINATNNFAEEGKLGEGGFGGVYKGFIIDSNLEVAVKRISKGSKQGKKEYISEVRVISRLRHRNLVQLIGWCHEQGELLLVYEFMPNGSLDSHLFGNRVMLSWVVRYKVALGLASALLYLHEEWEQCVVHRDIKSSNVMLDVNFNAKLGDFGLARLVDHELGSQTTVLAGTMGYLAPECVTTGKSSKESDVYSFGVVALEITCGRKPVEVKEEPGKVRLVEWVWSLYGKGKLLEAADEKLNREFEEQQMECLMVVGLWCCHPDHTMRPSIRQVISVLNFEAPLPSLPSKLPVPMYFAPPMETCEFSYTSSGATNTTKESFPYSTTSTGSGKSLL 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02654 700 SUPERFAMILY Concanavalin A-like lectins/glucanases 55 294 IPR013320 -
Spst3g02654 700 Gene3D Transferase(Phosphotransferase) domain 1 451 664 - -
Spst3g02654 700 Pfam Protein kinase domain 375 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g02654 700 SMART serkin_6 374 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g02654 700 FunFam L-type lectin-domain containing receptor kinase IX.1 55 303 - -
Spst3g02654 700 CDD STKc_IRAK 388 644 - -
Spst3g02654 700 Pfam Legume lectin domain 57 293 IPR001220 GO:0030246
Spst3g02654 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 494 506 IPR008271 GO:0004672|GO:0006468
Spst3g02654 700 SUPERFAMILY Protein kinase-like (PK-like) 358 667 IPR011009 -
Spst3g02654 700 PANTHER - 71 653 - -
Spst3g02654 700 ProSitePatterns Protein kinases ATP-binding region signature. 380 403 IPR017441 GO:0005524
Spst3g02654 700 CDD lectin_legume_LecRK_Arcelin_ConA 57 294 IPR001220 GO:0030246
Spst3g02654 700 Gene3D Phosphorylase Kinase; domain 1 359 450 - -
Spst3g02654 700 ProSitePatterns Legume lectins beta-chain signature. 180 186 IPR019825 -
Spst3g02654 700 ProSitePatterns Legume lectins alpha-chain signature. 264 273 IPR000985 -
Spst3g02654 700 FunFam L-type lectin-domain containing receptor kinase IX.1 359 450 - -
Spst3g02654 700 ProSiteProfiles Protein kinase domain profile. 374 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g02654 700 FunFam Lectin-domain containing receptor kinase A4.3 451 663 - -
Spst3g02654 700 Gene3D - 54 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02654 Spst-Chr3 75952958 75955060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02654 43 661 Receptor kinase-like Gene Family AT5G10530 52.913 0.0 609
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Spst3g02654 Pkinase 3.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02654 - - pvu:PHAVU_003G287100g 1147.11