Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02653 ATGAAGAAAAAGGCATCACGGGATGAACTTTTGTTGGTAAACCGTGTCCAACAGGGAATAGTGGGTGCCATTCACACATGTAAAAGGGCACCATCACTCGAAGGTGGATTTGGTTGCCAACTTTCGTTAAGGAGGGGTTCAAATAATGATTTTTCTAAGCTTCAGACTGACTTTTGCTTACCTGTTATATTTTCTGAAACTTTGAAGTCTCTCCCTCTTCCTCATCAAGTTTGTGAAAGACTGTTGTGCCCCTTAATTGGACCACGCCCTACGCTGAAGGGAAACTTCCTTAATGTGAAATTGTGGAAACTGAGGGGCTGGGGTCTAAGGGAGGGCAAGCCCTCGCAACGGGAACCTTCGAATCCTGGGGTCATTCTGAATACAAAGAATCATCAACAGTTGGTGGTTGAGAATGCAATTGTTTCCATAAAATTTTCAAGACCAGAGGGTTACATCCTTGGAATGTCATATAAAGGAATTAACATACTTGAAGATGAAAACGAAGAACAAGATAGAGGTTACCTGGACGTCGTTTGGAATAAGCCAGGAAAATCTAGTAATTTTCAGAGAATCATCGGGACAAATTTTTCGGTTATAGCAGCTGACGACGATATGGTGGAACTTTCATTTATGAGAACATGGACATCATCCATGAATGGCTATAGTGTCCCCATGAACATTGACATGAGATACATTTTGCGAAGTGGTGATTCAGGATTTTATTCATATGCAATATTTGATCGCCCTGAAGGATGGCCTGCGCTCGAGATTGACCAAATTAGGATCGTTTACAAACTCAAGAAAGCCAGGTTCAGCTACATGGCAATGTCAGATGAAAGGCAAAGGAACATGCCAACGAGGAGAGATAGAGAAACTGGTCAAACCCTGGCATACCCAGAAGCGGTTCTTTTAACCAGACCAAGCAACCCGGAATTCAGAGGAGAGGTGGATGATAAATACCAATACTCATGTGAGAACAGGGCTAACACTGTTCATGGATGGGTGAGTGTTGATACTGATGCACCCGTGGGTTTTTGGATGATAACCCCAAGTAATGAGTTCCGCAATGCTGGTCCCATCAAGCAAGACCTTACTTCACATGTTGGCCCCATTACCCTCTCGATGTTTATGAGCACGCACTATGCTGGCAAGGAGGTAACCATGGCATTTGAAGAAGGGGAGCCTTATAAAAAGGTTTTCGGTCCTGTGTTTGCCTACGTTAACTCTGCTTCAGGAGAGGATGGTACACTATCCCTCTGGTCAGACGCAGTGCAGCAGCAAGCCAAAGAAGTCAGACGTTGGCCTTACGAATTTCCTAAATCAGTAGATTTCATTCCACCCAGCGAAAGGGGAATAGTTTTGGGAAGATTACTAGTCAAAGATAGTTACTTCAGAGGAGGTAGACTTCTGTATGCTAACAATGCTTATGTTGGTCTAGCATTGCCTGGAGATGCAGGGTCATGGCAGATAGAAAGCAAGGGCTATCAATTCTGGACTCAAGCTGATATAAAGGGTTTTTTCCTAATCAACAATATTGTGCCCGGTGACTATAATTTGTATGCATGGGTTCCTGGCTTCATTGGTGATTACAGATATAATGCTACAATCACCATCTCACCGGGAAGAGTCCTTACATTGGATTCACTTGTTTATGTACCCCCAAGGAGTGGACCTACCATATGGGAAATTGGGTTCCCAGATCGCACGGCTGCAGAATTCTATGTACCAGACCCTTACCCTACGCTAATGAACAAATTATACAACGAACAGCACAGAGACAAGTTTAGGCAATACGGGTTGTGGGATCGTTACACTGATTTATATCCAGATGAAGATCTTGTTTACACTATAGGTGTTAGCAAGTATAACAAGGACTGGTTTTATGCTCACGTTTCAAGAAACATAGGAAATAAGACATACCAGCCAACGACATGGCAGATTGTATTTGAAAATCAAAGTCAAATAGTAAAAGGAAACTACACATTGCAACTGGCCTTGGCATGTACCAATGATGCTGACCTGCAGGTTCGTTTCAATGATCCTAACGCTAATCCTCCAGACTTTGCAACGGGGAAAATAGGAGGAGATAGTGCCATAGCAAGGCATGGTGTGCATGGATTGCACAGGCTGTTCAGCATTAGTTTACCAAGTGATCGAATTGTGAAAGGAACCAACACCATCTATCTGAAGCAGTCAAGAGCCAGGAATCCCTTTCAAGGAGTTATGTATGATTATATCCGATTAGAACGACCTCCATTGACATTCATATGA 2271 0.4311 MKKKASRDELLLVNRVQQGIVGAIHTCKRAPSLEGGFGCQLSLRRGSNNDFSKLQTDFCLPVIFSETLKSLPLPHQVCERLLCPLIGPRPTLKGNFLNVKLWKLRGWGLREGKPSQREPSNPGVILNTKNHQQLVVENAIVSIKFSRPEGYILGMSYKGINILEDENEEQDRGYLDVVWNKPGKSSNFQRIIGTNFSVIAADDDMVELSFMRTWTSSMNGYSVPMNIDMRYILRSGDSGFYSYAIFDRPEGWPALEIDQIRIVYKLKKARFSYMAMSDERQRNMPTRRDRETGQTLAYPEAVLLTRPSNPEFRGEVDDKYQYSCENRANTVHGWVSVDTDAPVGFWMITPSNEFRNAGPIKQDLTSHVGPITLSMFMSTHYAGKEVTMAFEEGEPYKKVFGPVFAYVNSASGEDGTLSLWSDAVQQQAKEVRRWPYEFPKSVDFIPPSERGIVLGRLLVKDSYFRGGRLLYANNAYVGLALPGDAGSWQIESKGYQFWTQADIKGFFLINNIVPGDYNLYAWVPGFIGDYRYNATITISPGRVLTLDSLVYVPPRSGPTIWEIGFPDRTAAEFYVPDPYPTLMNKLYNEQHRDKFRQYGLWDRYTDLYPDEDLVYTIGVSKYNKDWFYAHVSRNIGNKTYQPTTWQIVFENQSQIVKGNYTLQLALACTNDADLQVRFNDPNANPPDFATGKIGGDSAIARHGVHGLHRLFSISLPSDRIVKGTNTIYLKQSRARNPFQGVMYDYIRLERPPLTFI 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02653 756 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 127 752 - -
Spst3g02653 756 Pfam Polysaccharide lyase family 4, domain III 559 748 IPR029411 -
Spst3g02653 756 SUPERFAMILY Starch-binding domain-like 446 549 IPR013784 GO:0030246
Spst3g02653 756 Pfam Rhamnogalacturonate lyase family 122 316 IPR010325 -
Spst3g02653 756 Pfam Polysaccharide lyase family 4, domain II 473 544 IPR029413 -
Spst3g02653 756 CDD RGL4_N 133 414 - -
Spst3g02653 756 CDD RGL4_M 449 549 IPR029413 -
Spst3g02653 756 CDD RGL4_C 561 749 - -
Spst3g02653 756 Gene3D - 556 749 - -
Spst3g02653 756 Gene3D - 445 548 - -
Spst3g02653 756 SUPERFAMILY Galactose mutarotase-like 128 411 IPR011013 GO:0003824|GO:0005975|GO:0030246
Spst3g02653 756 SUPERFAMILY Galactose-binding domain-like 556 749 IPR008979 -
Spst3g02653 756 Gene3D - 123 412 IPR014718 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02653 Spst-Chr3 75914714 75921095 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02653 120 752 Polysaccharide Lyase AT1G09910 53.145 0.0 698
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02653 K18195 - gmx:100776664 1143.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02653 3 75914714 75921095 Spst3g02653 3 75914714 75921095 PCT