Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02651 ATGGCTTTCACAAAGAAATCTGGATTTCTCTTATGCTTCTGGGGAATGCATTTCTTCTTCTTACTCCTTGGCTGCACTTCAAGGAGTTTAAGAGAGTTCAAAAGTTCTGACGTAACATCTAATAATCCTGCAGTTAAACTGCATATAGAAAAGAAGCAGGTGATAGCGGAAAATGACATCATTCGTGTAACTTTCTCAAATCCGGAGGGTACTGTCCTTGGAATAACATATAATGGAATAAATAATGTGCTCGAAGGTCGCAATAAATTTAACAACAGAGGGTATTTTGACATTGTCTGGAATGCACCAGGACGCCCTTCCAAACTTTGGGGAGGAAGTTCAGGATTATACATATACGCTGTATTTGAGCATCCTGAACATTTTCCTGCTCTGGAGATTGATCACATTAGGATTGTTTTCAAGCTACAAAATGACAGGTTCCACTACATGGCTGTTGCAGATGATAGGCAACGACTCATGCCAACACCAGAAGATAGATCTTTGGGACAACGCCTTGATTATGATGAAGCAGTTCTAATCACCAGCCCTAGTAACCCGGAACTTCAAGGAGAGGTTGATGACAAATATCAATACTCCTGTGAGAACAAAGACAATAAAGTTCATGGGTGGATTAACTTGGACTCCAAGACCAATGAATCAGTGGGCTTTTGGATGATCACACCCAGTAATGAGTTTCGTAGTGGTGGCCCAATTAGACAAGGCCTCACTTCTCATGTTGGCCCTACCACCCTTAATATACTTCATACCACTCACTACTCCGGCAAGGAAGTAACCATGAAATTACAAGAAGGGGAACCCTTCAAGAAAGTTTATGGTCCCGTTTTTGCTTATCTCAACTCCATTTCTGGTATTCATGATTCTGAACGAGTCCTCTGGAGTGATGCTGTTCTACAGCTATCTAAGGAAGTCAATAGATGGCCTTATGATTTTCCCAAATCAGAAGATTTTGTCCCAACCAATAAACGAGGAAGATTGGAGGGACAATTACTTATCCAAGACAGACACATTAAAGGAGGGAAATTTGTGTACGGCGACAATGCTTTTATTGGTTTGGCTCTACCTGGGGATGTAGGATCATGGCAAAGACAAAGCAAGGGTTACCAATTCTGGACTGAAGCTGACAAATTGGGCCACTTCACAATTGAAAATATTGTACCAGGGGAATACAATTTATACGCATGGGTTCCTGGTATTTTTGGGGACTACAAATATAGCACCATTGTAATCATCACACCAGGATGCAATATCCAATTGGGTTCACTCATATACAATCCTCCAAGAAATGGACCTACCGTATGGGAAATTGGCATACCAGATCGCTCTGCTGCAGAGTTCTATGTTCCAAATCCTTATCATAATCTCATAAACCGATTGTACACTGGGAAACCATTACACAAGTTTAGACAATATGGATTATGGGCGCGTTACACTGAGTTATATCCAAATGAGGACCTCATTTACAATGTTGGTGTGAGTGATTATAGTAAAGATTGGTTTTATGCTCAAGTTCCCAGGAAGATAGGAAACAACAAATATCACCCAACAACATGGGAGATTAAATTCCATTTGCCATTTGTTACAAGAGGCAGATACACAATGCGACTTGCCTTGGCCTCAGCTACACGTTCCAACCTGGTGGTTGGGTTTAATAACCCTGTGGCTCGTCCTCCACACTTCTCTACGGGATCAATAGGCCAAGATAATGCCGTAGCAAGACATGGCATCCATGGATTATATTGGTCTTACAGTATTGAAGTTCCAAGCAATCTTTTGGTGGAAGGAAGCAACACCATCTATCTGAGGCAAGCAAAAGGGATAAGTCCTTTCCAAGGCATTATGTATGACTACATCCGTTTCGAAAGACCAGAAGTTTAG 1896 0.414 MAFTKKSGFLLCFWGMHFFFLLLGCTSRSLREFKSSDVTSNNPAVKLHIEKKQVIAENDIIRVTFSNPEGTVLGITYNGINNVLEGRNKFNNRGYFDIVWNAPGRPSKLWGGSSGLYIYAVFEHPEHFPALEIDHIRIVFKLQNDRFHYMAVADDRQRLMPTPEDRSLGQRLDYDEAVLITSPSNPELQGEVDDKYQYSCENKDNKVHGWINLDSKTNESVGFWMITPSNEFRSGGPIRQGLTSHVGPTTLNILHTTHYSGKEVTMKLQEGEPFKKVYGPVFAYLNSISGIHDSERVLWSDAVLQLSKEVNRWPYDFPKSEDFVPTNKRGRLEGQLLIQDRHIKGGKFVYGDNAFIGLALPGDVGSWQRQSKGYQFWTEADKLGHFTIENIVPGEYNLYAWVPGIFGDYKYSTIVIITPGCNIQLGSLIYNPPRNGPTVWEIGIPDRSAAEFYVPNPYHNLINRLYTGKPLHKFRQYGLWARYTELYPNEDLIYNVGVSDYSKDWFYAQVPRKIGNNKYHPTTWEIKFHLPFVTRGRYTMRLALASATRSNLVVGFNNPVARPPHFSTGSIGQDNAVARHGIHGLYWSYSIEVPSNLLVEGSNTIYLRQAKGISPFQGIMYDYIRFERPEV 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02651 631 CDD RGL4_C 440 627 - -
Spst3g02651 631 Gene3D - 436 627 - -
Spst3g02651 631 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 112 630 - -
Spst3g02651 631 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Spst3g02651 631 Pfam Polysaccharide lyase family 4, domain III 438 625 IPR029411 -
Spst3g02651 631 Pfam Polysaccharide lyase family 4, domain II 352 424 IPR029413 -
Spst3g02651 631 Pfam Rhamnogalacturonate lyase family 112 192 IPR010325 -
Spst3g02651 631 Pfam Rhamnogalacturonate lyase family 42 108 IPR010325 -
Spst3g02651 631 CDD RGL4_N 45 287 - -
Spst3g02651 631 SUPERFAMILY Galactose mutarotase-like 57 289 IPR011013 GO:0003824|GO:0005975|GO:0030246
Spst3g02651 631 Gene3D - 29 283 IPR014718 GO:0030246
Spst3g02651 631 FunFam Rhamnogalacturonate lyase B 325 425 - -
Spst3g02651 631 Gene3D - 324 424 - -
Spst3g02651 631 CDD RGL4_M 328 428 IPR029413 -
Spst3g02651 631 SUPERFAMILY Starch-binding domain-like 325 424 IPR013784 GO:0030246
Spst3g02651 631 SUPERFAMILY Galactose-binding domain-like 435 627 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02651 Spst-Chr3 75877173 75881449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02651 44 629 Polysaccharide Lyase AT1G09910 51.104 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02651 K18195 - gmx:100792575 1011.91