LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst3g02614	ATGGATTTTGAGGACCATGACGAAGCTCAGCTGGGGATGACCGGACCCACCTATGATGACTCGCCGTTCAACCCCTGCCGAGTCAAAATGCCCACTCACACCGCCGAAGAAGACCCCGTGCCGCCGGCGGTCACTCCATCTCCTACCAACACCCGAAACAGTGCCAGGGGAAAGTACAAAGAGTGCCTCAAGAACCACGCCGTCGGAATCGGCGGTCACGCGCTCGACGGCTGCGGCGAGTTCATGGCGGCGGGCGCGGAGGGAACCCTGGACGCCCTTAAATGCGCCGCCTGTAACTGCCACCGCAACTTCCACCGGAAGGACCCCGCCGATAGCCCCTTCCTAATGCCCTTCCAACAGCGCCGCCACCAGCCGCCGCAGTTCGCGGCGGCCTACTTCCGGGCGCCGGCGGGCTACCTGCAGGTGGCGGGTCAGCAGCGTGGAGGCCTAGCCACGCTGGCACTCCCGTCCACGTCAGGTGCGGGCGGTGGGCCCCAGAGCCCGAGGGAGGACCAGGAAGATGTGTCGGACCCAAGTGGTGGTGGTAGCGGGTCCAACAAGAAGAGGTTCAGAACCAAGTTCACTCTGGAGCAGAAAGACAAGATGCTCGCTTTCGCTGAAAAATTGGGTTGGAGGATTCAGAAGCACGACGAGAGTGTCGTGCAGGAGTTCTGTTCCCAAACTGGCGTTCAGCGTCATGTCCTTAAGGTCTGGATGCATAACAACAAGCACACCCTTGGAAGAAAAAAAGCATATAAAAAGATAGAAGAAAAGTGCAGAGAAGGTATTATTCTTGATGAGGAGTCAACTCAAAGGTGCAGTTGTCTAAGATTGGGAGGGACCTCATTTAGATTCGTTTGTATTCACAGCTTTTTCCAAAGCGAAATTGAAGATTTGAAAGGAAAAAAAGGGAAAGTTTCCAAGTCCAGCAAGCAAGAAAGCAAGCAACTGATTGACAACAAGTGCACTCAGTGTCCTCTCCTCTGTTTCCTAGGTCAAGTCCAACCAAACTCCCCTGTCTCTCTCACTTTGTTCCTCGTTTCCTCCGACCCATCCTTTACCAATTACCATTGCTTCCTCCGACTTTCAACATCCATCACACTCTCTATCTGGTTTCAGATTCTTCACACCCCCAACACATATTCCTCTCTGATGGGTTCCATCTCGCACGTGATCACCACCAACCCCACTCTCCTCCACCTACCCTCTACACGCTCCACCGCAATCCGCTTCTCCGGCTTCAATCCTCGCCTCCTCCCGCTGCCACCCGCCAGAGGAGTCGCCGGGAAAGTCGGCGTCTTTGCGGAGCTTAGCAGCCCAAGTAGCACCACTTCCGCCATCGATTTCAGCGACCCCGATTGGAAAACAAAGTTCCAGCAAGATTGGGAGGCTCGTTTCAGACTGCCCCATCTCACCGACATCTTCCCAGATGCTCCTCCCATTCCTTCCACCTTTTGTCTTAAAATGAGAACTCCGATTGATAGAGACTTTCCTGGTCATTATTCTTCTGATGAGGAGTGGCATGGATATATTAATAACAATGACAGAGTGCTTCTTAAGACAATATACTATTCGTCACCTACATCTGCTGGTGCTGAGTGCATTGATCCTGATTGTACTTGGGTGGAACAATGGGTTCATCGAGCTGGGCCTCGGGAAAAGATATACTATAAACCAGAAGAAGTAAAGGCAGCAATTGTTACTTGTGGAGGGCTCTGCCCTGGTCTTAATGATGTTATTAGACAGATTGTAATCACCCTTGAAATATACGGTGTAAATAACATTGTGGGGATTCCTTTTGGCTATCGAGGATTTTCCGACAGAGAATTGACTGAATTGCGGTTATCAAGAAAAGTAGTGCAGAATATTCATCTTTCTGGCGGAAGCCTGTTGGGAGTTTCGCGAGGAGGACCTGGAGTCAGTGATATCGTGGACAGTCTGCAGGAAAGAGGGATCAACATGCTTTTTGTATTGGGTGGAAATGGTACCCATGCTGGTGCAAATGCAATTCACCACGAGTGCTGCAAAAGAGGGTTGAAGGTATCTGTAATTGGTGTGCCCAAAACTATTGACAATGATATATTATTGATGGATAAAACGTTTGGCTTTGATACTGCTGTTGAAGAAGCACAAAGAGCAATAAATTCTGCATACATTGAGGCACATAGTGCATATCATGGAATTGGGGTTGTGAAATTGATGGGCCGTAGCAGTGGATTCATAGCAATGCAGGCATCCCTGTCTAGTGGACAGGTTGACATATGCTTGATTCCTGAGGTACCTTTCAATTTCCATGGTCCTCATGGAGTATTGGGTCATCTCAAGTTCCTTTTAGAAACGAAGGGATCAGCTGTAGTCTGTGTTGCAGAGGGAGCTGGACAGAATTTACTCCAAAAGACAAATGCTAGGGATGCATCAGGAAATGTTGTATTTGGAGATATTGGAGTATATATTCAACAAGAGACAAAAAAATATTTTAAGGAGATTGGTGTTCATGCTGATGTAAAATATATTGATCCAACATACATGATCCGTGCAATTCGAGCTAATGCATCAGATGGAATTCTATGCACTGTACTTGGACAAAATGCTGTTCATGGTGCGTTTGCAGGATATAGTGGCATTACAGTTGGCTTATGTAACACCCACTATGCTTACTTTCCCATCCCCGAAGTGATATCTCATCCTAGGTTGGTGGACCCCAATAGTCGAATGTGGCATCGTTGCTTAACTTCAACAGGTCAACCTGACTTCATCTAA	2760	0.488	MDFEDHDEAQLGMTGPTYDDSPFNPCRVKMPTHTAEEDPVPPAVTPSPTNTRNSARGKYKECLKNHAVGIGGHALDGCGEFMAAGAEGTLDALKCAACNCHRNFHRKDPADSPFLMPFQQRRHQPPQFAAAYFRAPAGYLQVAGQQRGGLATLALPSTSGAGGGPQSPREDQEDVSDPSGGGSGSNKKRFRTKFTLEQKDKMLAFAEKLGWRIQKHDESVVQEFCSQTGVQRHVLKVWMHNNKHTLGRKKAYKKIEEKCREGIILDEESTQRCSCLRLGGTSFRFVCIHSFFQSEIEDLKGKKGKVSKSSKQESKQLIDNKCTQCPLLCFLGQVQPNSPVSLTLFLVSSDPSFTNYHCFLRLSTSITLSIWFQILHTPNTYSSLMGSISHVITTNPTLLHLPSTRSTAIRFSGFNPRLLPLPPARGVAGKVGVFAELSSPSSTTSAIDFSDPDWKTKFQQDWEARFRLPHLTDIFPDAPPIPSTFCLKMRTPIDRDFPGHYSSDEEWHGYINNNDRVLLKTIYYSSPTSAGAECIDPDCTWVEQWVHRAGPREKIYYKPEEVKAAIVTCGGLCPGLNDVIRQIVITLEIYGVNNIVGIPFGYRGFSDRELTELRLSRKVVQNIHLSGGSLLGVSRGGPGVSDIVDSLQERGINMLFVLGGNGTHAGANAIHHECCKRGLKVSVIGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGIGVVKLMGRSSGFIAMQASLSSGQVDICLIPEVPFNFHGPHGVLGHLKFLLETKGSAVVCVAEGAGQNLLQKTNARDASGNVVFGDIGVYIQQETKKYFKEIGVHADVKYIDPTYMIRAIRANASDGILCTVLGQNAVHGAFAGYSGITVGLCNTHYAYFPIPEVISHPRLVDPNSRMWHRCLTSTGQPDFI	919

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Spst3g02614	919	MobiDBLite	consensus disorder prediction	153	191	-	-
Spst3g02614	919	FunFam	Zinc-finger homeodomain protein 2	175	248	-	-
Spst3g02614	919	Gene3D	-	558	749	-	-
Spst3g02614	919	NCBIfam	homeobox domain, ZF-HD class	187	243	IPR006455	-
Spst3g02614	919	PRINTS	ATP-dependent phosphofructokinase family signature	684	701	IPR022953	GO:0003872\|GO:0006002\|GO:0006096
Spst3g02614	919	PRINTS	ATP-dependent phosphofructokinase family signature	723	739	IPR022953	GO:0003872\|GO:0006002\|GO:0006096
Spst3g02614	919	PRINTS	ATP-dependent phosphofructokinase family signature	651	667	IPR022953	GO:0003872\|GO:0006002\|GO:0006096
Spst3g02614	919	PRINTS	ATP-dependent phosphofructokinase family signature	566	585	IPR022953	GO:0003872\|GO:0006002\|GO:0006096
Spst3g02614	919	PRINTS	ATP-dependent phosphofructokinase family signature	592	605	IPR022953	GO:0003872\|GO:0006002\|GO:0006096
Spst3g02614	919	PRINTS	ATP-dependent phosphofructokinase family signature	780	792	IPR022953	GO:0003872\|GO:0006002\|GO:0006096

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst3g02614	Spst-Chr3	74778479	74792683	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst3g02614	55	256	ZF-HD Transcription Factor Family	AT4G24660	52.174	5.34e-58	197

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	zf-HD	Spst3g02614		PFK	1.3e-61	CL0240

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst3g02614	K00850		-	gmx:100793883	991.875

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst2g01349	2	12160811	12171024	Spst3g02614	3	74778479	74792683	PCT

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