Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02583 ATGGAAGACGAAATGTACGGCATGCAATCGACAGCGGAGTACTCGGACAAAGCGTTGATGACGCCGGATAACATATTTCCGGCGGAGTATCACGGTTTCTTAATGTCCTCCGGTGGCCGTATTCCGATGTTCGGATCCGACGAGTTACTCTCCGCCGCGGTGGCCATCACCGCCGGCTACGAAACTGAACCCTACCCGAACGTCGGCATCGCACCTGAAATTCAGCGCCACCACGACACCTCTTCCCTCATCAAAGCCAAAATCGCCTCTCACCCTCACTACCCTCGCCTCCTTCAAGCCTACATCGATTGCCAGAAGGTGGGAGCGCCTCCAGAAATCGCGTGTTTGTTAGAGGAAATCCGACGAGAAAACGACGTTTGCAAGAGGGACGTTGTTTACACGTGCGTTGGAGCCGATCCCGAACTCGACGAGTTCATGGCAACCTACTGTGACATGCTGGTGAAATACAAATCCGATCTGACGCGGCCTTTTGACGAAGCCACTACATTCCTCACCAAGATTGAAACGCAGCTTACCGATCTCTGCACTGGTTCTTCTCTTCCAACCCTTTCCGTACTTCGCATGGAGAGTTATATAAACCCTACGTTTGGCACAGGACGGAAGCATCCTGCTCTCTACTTTGGCACTGCATCTCTGACGAGAATGACCGTCATGAATGAATATTTAGCTCGGCTAACCTCTCTCGTGTTAAGGAAATATGATGGGGGTGTATCTTCGGAAGAAGGTTTTAGTGCTGGAGATGTTGATCCCCATGATGAGCAATTGCGTAGTGAAGATCGAGAGCTGAAGGATAGACTTTTACGGAAGTTTGGAAGTCACATTGGTTCTTTGAAATTGGAATTTTCAAAGAAGAAAAAGAGGGGTAAGCTGCCAAAAGACGCTAGGCAAACACTACTTCAGTGGTGGAATATGCACTACAAATGGCCTTACCCTACGGAAGGTGATAAGATTGCACTGGCTAAATCAACTGGGTTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAGCGTCACTGGAAACCATCGGAGAATATGCCATTTTCTGTGGTGGATGGTCTTACTGAGCAAGACTATTTAGCCCGTGTATTACTTGAAAATGATGATATGATCTATCCACCAACCAAGTCACGTGACAGTGGAGAGGCACGTCACCGTTAA 1188 0.4798 MEDEMYGMQSTAEYSDKALMTPDNIFPAEYHGFLMSSGGRIPMFGSDELLSAAVAITAGYETEPYPNVGIAPEIQRHHDTSSLIKAKIASHPHYPRLLQAYIDCQKVGAPPEIACLLEEIRRENDVCKRDVVYTCVGADPELDEFMATYCDMLVKYKSDLTRPFDEATTFLTKIETQLTDLCTGSSLPTLSVLRMESYINPTFGTGRKHPALYFGTASLTRMTVMNEYLARLTSLVLRKYDGGVSSEEGFSAGDVDPHDEQLRSEDRELKDRLLRKFGSHIGSLKLEFSKKKKRGKLPKDARQTLLQWWNMHYKWPYPTEGDKIALAKSTGLDQKQINNWFINQRKRHWKPSENMPFSVVDGLTEQDYLARVLLENDDMIYPPTKSRDSGEARHR 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02583 395 SMART ELK_2 268 289 IPR005539 GO:0003677
Spst3g02583 395 Pfam KNOX2 domain 135 182 IPR005541 GO:0003677|GO:0005634
Spst3g02583 395 Pfam ELK domain 268 289 IPR005539 GO:0003677
Spst3g02583 395 ProSitePatterns 'Homeobox' domain signature. 326 349 IPR017970 GO:0000981|GO:0006355
Spst3g02583 395 ProSiteProfiles ELK domain profile. 268 288 IPR005539 GO:0003677
Spst3g02583 395 SUPERFAMILY Homeodomain-like 289 360 IPR009057 -
Spst3g02583 395 CDD homeodomain 300 352 IPR001356 GO:0003677
Spst3g02583 395 Pfam Homeobox KN domain 308 347 IPR008422 GO:0003677|GO:0006355
Spst3g02583 395 SMART KNOX1_2 82 126 IPR005540 GO:0003677|GO:0005634
Spst3g02583 395 Pfam KNOX1 domain 84 125 IPR005540 GO:0003677|GO:0005634
Spst3g02583 395 SMART HOX_1 290 355 IPR001356 GO:0003677
Spst3g02583 395 SMART KNOX2_2 132 183 IPR005541 GO:0003677|GO:0005634
Spst3g02583 395 Gene3D - 287 357 - -
Spst3g02583 395 ProSiteProfiles 'Homeobox' domain profile. 288 351 IPR001356 GO:0003677
Spst3g02583 395 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 87 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02583 Spst-Chr3 74199498 74211534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02583 3 361 Homeobox Transcription Factor Family AT1G23380 58.491 1.13e-131 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Spst3g02583 KNOX2 5.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02583 - - gmx:100786454 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02583 3 74199498 74211534 Spst3g02583 3 74199498 74211534 ECH
Spst3g02583 3 74199498 74211534 Spst3g02583 3 74199498 74211534 PCT
Spst3g04391 3 95531150 95537616 Spst3g02583 3 74199498 74211534 PCT