Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02577 ATGTCAACAATGAACCATCTTTTTGATCTTCCAGAACAGATATGCTACGTACAATGTGGATTCTGTACCACCATATTAATGGTAAGCGTCCCATGCAGCGGTTTGTCAATGTTGGCAAACGAAGGTAGTTCAGAAGATGGTGCAAACAAGAGTTTGAACAGCTATAATGCATCCATAATGACCTATTCTGACTGTGAGGAAGAGAACATGCCTCAAACTTCCAATGTTGTGAATAAACCCCCAGAGAAGAAACAGAGGACACCATCTGCTTATAATCGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTGAAAATCCTAACATGGCCCACAAAGAAGCTTTCAGCACTGCTGCAAAAAATTGGGCCAATTTCCCCCCTTCTCAGTGCAAAGGAGAAGCAGACAGATGTAAACTTGTGAATCTGGACTCCCATATACAGTCTCCTCATGCTACTCAGATTATGCATTCATGGAGTTCGGGAATTTCGGATCTATTTGGATTGGTGTAG 510 0.4176 MSTMNHLFDLPEQICYVQCGFCTTILMVSVPCSGLSMLANEGSSEDGANKSLNSYNASIMTYSDCEEENMPQTSNVVNKPPEKKQRTPSAYNRFIKEEIKRLKAENPNMAHKEAFSTAAKNWANFPPSQCKGEADRCKLVNLDSHIQSPHATQIMHSWSSGISDLFGLV 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02577 169 Gene3D High mobility group box domain 76 137 IPR036910 -
Spst3g02577 169 SUPERFAMILY HMG-box 72 129 IPR036910 -
Spst3g02577 169 CDD HMG-box_SF 86 129 - -
Spst3g02577 169 FunFam Axial regulator YABBY 4 73 139 - -
Spst3g02577 169 Pfam YABBY protein 48 128 IPR006780 GO:0007275
Spst3g02577 169 Pfam YABBY protein 11 37 IPR006780 GO:0007275
Spst3g02577 169 PANTHER PROTEIN YABBY 6-RELATED 1 37 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02577 Spst-Chr3 73991473 73993132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02577 2 137 C2C2-YABBY Transcription Factor Family AT1G23420 46.409 2.03e-47 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Spst3g02577 YABBY 6e-33 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02577 K25796 - gmx:100807136 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02577 3 73991473 73993132 Spst3g02577 3 73991473 73993132 ECH
Spst3g02577 3 73991473 73993132 Spst3g02577 3 73991473 73993132 PCT