Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02562 ATGAGTGGTTTGGGTGTAGTAGAGTGGCTTAGACCTCTTGTTGAGACCAATGTTTGGGATTATGTTGTTGTTTGGAAATATGGGGATGACCCAACTAGGTTTATTGAGTGGATAGGTTGCTGTTGTAGAGGGAGTTGCAGTATGAACACTGGTGTGGTGAAGTCCAAAGAGGAAAATGGTAAAGTATGCCACTTGGCTCCCGTTTGCAGGGATAATTATCTTCAGCATCATGTTAGAACAAAGGCTTGTGAGGCTCTTGCTCAACTTCCTTTTGCATTGTCTCTCTATTCTGGTGTGCATGGAGAGGTTGCCATATCTCAACAATCAAGATGGATTACCAAGGATTCAATTGGAACCCAAGTTTTGATCCCTATTGTTGGTGGTCTTATTGAGCTCTTCACTGAAAAGCTGATTCCAATGGATATGAATATCATAGAGTTCATCACAGCACATGGCTGTGTCTCTTTAAAGCAAGAAGCCATATCTGCACAGAGCTACACCAGTCTGAACATCATTGAACATCTCCCATTAAGGGAACAGTACTCACATTGGTGGCTACCACACATGTCAACAACTTTAACTCCTAGTGTCCTTCATCATGAAACAAAACAGTGCACCTCCCATCCTAGCATTGAAGGACCCCCCAGTGGGTCTAATCCTTCAACTGAAGAACCATCATTTGATTCAAAGTGTGTTGGTCTGATCCCAGATGAGTATCTAAAGCAATCAGTTAAAATATCTCCTATCCCCAAAACTAAAATACCCAGGTACAACAAAACATCGGGGAAACAGCAGAGAGGTTTGAGTTCCCATTGTAGCAATGGGGAACAAGGTAAATCAAAATTGGTCAAGGAGCCTCAGAAGGAAGGGTACCAGGCTAAAAATCTTGTCACAGAGAGGAATAGGAGAAATAAGATTAAAAAAGGGCTTTTTACTCTGCGGTCTTTGGTCCCAAAGATAACCAAGATGGATAGAGCTGCAATTCTTGCAGACGCAGTTGACTATATAAAGGAATTGCATACAACGATGAAAGAACTAAAAGATGAGGCCAGGGTTTTGGAAGTACAGGACTGTGACAAAAACCCACCACAATTGAGGAAGCCAACGGGCAAAGAACAAGAAGGAACCACAATTGACCCTCTTAATCAAAGTTCTTCTGATTGCACTAAAAAGATGCAGATGGAGCAGGTGCAAGCAGAAGTGCACCACATTAGCAAGAAAGATTTCTTGATTAAGTTATACTGTGAGCAGAAGCAAGGTGGGTTCTCAAAGTTGATGGAAGCTATACATTCAATTGGACTACAGGTGGCTAGTGCCAATATGACCACATGTGATGACAAAGTCCTGAGTATTCTGACGGTTAAGGCAACCAAGAAGGATATTCACCCAACTAAACTGAAAGAGTATTTAATACAAAAGACAAGCGATGCTAGACAAAGTCGGTAA 1446 0.4184 MSGLGVVEWLRPLVETNVWDYVVVWKYGDDPTRFIEWIGCCCRGSCSMNTGVVKSKEENGKVCHLAPVCRDNYLQHHVRTKACEALAQLPFALSLYSGVHGEVAISQQSRWITKDSIGTQVLIPIVGGLIELFTEKLIPMDMNIIEFITAHGCVSLKQEAISAQSYTSLNIIEHLPLREQYSHWWLPHMSTTLTPSVLHHETKQCTSHPSIEGPPSGSNPSTEEPSFDSKCVGLIPDEYLKQSVKISPIPKTKIPRYNKTSGKQQRGLSSHCSNGEQGKSKLVKEPQKEGYQAKNLVTERNRRNKIKKGLFTLRSLVPKITKMDRAAILADAVDYIKELHTTMKELKDEARVLEVQDCDKNPPQLRKPTGKEQEGTTIDPLNQSSSDCTKKMQMEQVQAEVHHISKKDFLIKLYCEQKQGGFSKLMEAIHSIGLQVASANMTTCDDKVLSILTVKATKKDIHPTKLKEYLIQKTSDARQSR 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02562 481 Gene3D - 283 357 IPR036638 GO:0046983
Spst3g02562 481 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 290 339 IPR011598 GO:0046983
Spst3g02562 481 Coils Coil 329 356 - -
Spst3g02562 481 SMART finulus 296 345 IPR011598 GO:0046983
Spst3g02562 481 MobiDBLite consensus disorder prediction 200 228 - -
Spst3g02562 481 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 290 355 IPR036638 GO:0046983
Spst3g02562 481 MobiDBLite consensus disorder prediction 252 290 - -
Spst3g02562 481 Pfam Helix-loop-helix DNA-binding domain 297 339 IPR011598 GO:0046983
Spst3g02562 481 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 149 IPR025610 -
Spst3g02562 481 MobiDBLite consensus disorder prediction 200 226 - -
Spst3g02562 481 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 198 472 - -
Spst3g02562 481 MobiDBLite consensus disorder prediction 359 386 - -
Spst3g02562 481 MobiDBLite consensus disorder prediction 257 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02562 Spst-Chr3 73839507 73842353 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02562 6 461 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 28.627 2.22e-51 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g02562 bHLH-MYC_N 2.1e-15 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02562 - - gsj:114423672 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02562 3 73839507 73842353 Spst3g02562 3 73839507 73842353 ECH