Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02561 ATGGGTTCAGGATCAGGCCCCAAGGCCAAGCATGTTAATTCCCATGCAAACTCAACGGTTTCTTCTCCCGCCCCCTCTTCTGGTGATCATTCAGCAAAATATGTTGACTATACAGTCGCCGGACTTTTCGTTATTGCCTTGCTTGCTGTAGCTGTAGCTGTTGCCCTCGCGTTTAAGAAGAAGAAATCCAGAGATGATGCTAATGGTGCAGCCTACATGCCACCCCTTAATATTCAAGTCAAATCAGGTGCTAATGGCCATTACTATGTACAACAGCCTTTCGTTGCAAACAACTATGGAAATGGGAGTGCGAGCTCAGCTCAGCCCACAGCTGCTCAGATAGTTTTCACCTATGACATGGTTACGGAAATAACAAATGCATTTTCTAGTCAAAATGTTATAGGGGAAGGAGGGTTTGGATGTGTTTACAAAGGTTGTCTGCCAGATGGAAAAAGAGTTGCAGTAAAGCAGCTTAAGGCTGGCAGTGGACAGGGAGAAAGGGAATTCAAGGCTGAAGTGGACATCATCAGCCGATTACATCATCGACATTTGGTGTCATTAGTTGGTTCTTGCATATTTGAACAGCAAAGAATTCTTATCTATGAGTATGTTCCTAATGGAACACTCCATCATCACTTGCATGGAATGGGAATGCCAGTGTTGGATTGGGCCAAGAGGCTAAAGATTGCAATAGGCGCTGCAAAGGGCCTGGCATATCTTCATGAGGACTGCAGCCAAAAGATAATTCACAGAGATATTAAGTCAGCAAACATACTCTTGGATGACGCTTTTGAGGCACTGGTTGCAGACTTTGGACTTGCAAAGCTAACCGATGCTGACAATAGCCATGTATCAACTAGGGTTATGGGGACCTTTGGGTACATGGCTCCAGAATATGCAACAAGTGGAAAATTAACAGACAGATCAGATGTTTACTCATTTGGGGTAGTCCTCCTTGAGCTTGTAACGGGAAGGAAACCAGTTGATCAAACTCAGCCAATTGGAGATGAGAGTTTGGTTGAGTGGGCTCGTCCACATCTCCTTAGCGTAATGGAGACACGTAATTTTAGTGAACTAGTAGATCCAAGACTCGAAAAACACTTTGTGGAGAAAGAAATGTTCAGAATGATTGAGGCAGCTGCAGCTTGTGTTCGCCACTCAGCTCCTAGACGGCCTCGTATGGTTCAGGTGGTAAGAGCCTTGGATACTGGAGACGAAAAATCTGATCTATCTAATGGGGTGAAATATGGTCAGAGTACAATTTATGATTCTGGCCAATATGATAAAGAAATAATGCTATTCAAAAAGATGGCTAATGGCACCTTTTCTGATTCTGATTTCGATATGTATAGTAGAGAATACAGTCTTTCAAGAGAGACCTCAAGAGGATCCCAACAAGAATTGATCCGGAATAGTTCCTGTGGCGAGTTATAA 1434 0.4351 MGSGSGPKAKHVNSHANSTVSSPAPSSGDHSAKYVDYTVAGLFVIALLAVAVAVALAFKKKKSRDDANGAAYMPPLNIQVKSGANGHYYVQQPFVANNYGNGSASSAQPTAAQIVFTYDMVTEITNAFSSQNVIGEGGFGCVYKGCLPDGKRVAVKQLKAGSGQGEREFKAEVDIISRLHHRHLVSLVGSCIFEQQRILIYEYVPNGTLHHHLHGMGMPVLDWAKRLKIAIGAAKGLAYLHEDCSQKIIHRDIKSANILLDDAFEALVADFGLAKLTDADNSHVSTRVMGTFGYMAPEYATSGKLTDRSDVYSFGVVLLELVTGRKPVDQTQPIGDESLVEWARPHLLSVMETRNFSELVDPRLEKHFVEKEMFRMIEAAAACVRHSAPRRPRMVQVVRALDTGDEKSDLSNGVKYGQSTIYDSGQYDKEIMLFKKMANGTFSDSDFDMYSREYSLSRETSRGSQQELIRNSSCGEL 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02561 477 CDD STKc_IRAK 134 402 - -
Spst3g02561 477 Gene3D Phosphorylase Kinase; domain 1 95 203 - -
Spst3g02561 477 Pfam Protein tyrosine and serine/threonine kinase 131 401 IPR001245 GO:0004672|GO:0006468
Spst3g02561 477 MobiDBLite consensus disorder prediction 1 28 - -
Spst3g02561 477 ProSiteProfiles Protein kinase domain profile. 128 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g02561 477 ProSitePatterns Protein kinases ATP-binding region signature. 134 156 IPR017441 GO:0005524
Spst3g02561 477 SUPERFAMILY Protein kinase-like (PK-like) 108 401 IPR011009 -
Spst3g02561 477 MobiDBLite consensus disorder prediction 10 28 - -
Spst3g02561 477 FunFam Proline-rich receptor-like protein kinase PERK8 101 203 - -
Spst3g02561 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Spst3g02561 477 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 44 444 IPR047117 -
Spst3g02561 477 Gene3D Transferase(Phosphotransferase) domain 1 204 421 - -
Spst3g02561 477 SMART serkin_6 128 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g02561 477 FunFam proline-rich receptor-like protein kinase PERK8 204 416 - -
Spst3g02561 477 MobiDBLite consensus disorder prediction 458 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02561 Spst-Chr3 73817157 73838667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02561 9 473 Trihelix Transcription Factor Family AT1G70460 60.852 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Spst3g02561 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02561 - - pvu:PHAVU_003G060600g 720.694