Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02556 ATGCAAAACATGTCTCTCTGTGCTTCACTCTCCACCACAACTTCAAATCTCACTTCCCTTCCTTCTTCCCTCCCTTCCACCTCTCCACTTTCTCTCAGATTTTCCTTCCCTTTCCGGGAAAACAGATCCTCAGTTACACCTCTCAAGGCCCCCTTTTCAGCACGGCCTGCAAGAGTTTTGGTAAAAGCTCAGGCTACTGCACCTGCTTCTTCTGAGGCTGTGAAACTGACACCCGTTCCTTCTCAGATGAAGGCATGGGTGTATGGGGAATATGGGGGTGTCGATGTTTTGAAGCTGGACTCCAATGTTGCTGTGCCTGATGTGAAGGAGGATCAGGTCCTTGTCAAAGTTGTTGCTGCTGCTCTTAACCCTGTTGATGCCAAGAGAAGGCAGGGAAAGTTTAAGGCCACTGATTCTCCTCTTCCGACTGTTCCGGGCTATGATGTTGCGGGTGTGGTGGTGAAGGTTGGTAGTAAAGTGAAGGACTTTAAAGTGGGTGATGAAGTGTATGGAGATGTAAATGAGAAAGCATTAGATGGGCCTAAGCAATTCGGGTCTTTGGCTGAGTACACAGCTGTTGAGGAGAAATTGTTGGCACCAAAACCTAAGAATTTGGACTTTGCTCAGGCTGCTGCGCTTCCTCTAGCAATTGAGACTGCTTATGAGGGTCTGGAGAGGACTGGATTTTCTCCTGGTAAATCAATTCTTATTCTAAATGGTTCTGGAGGAGTTGGAAGCCTGGTGATTCAGCTAGCTAAGCAAGTCTTTGGAGCTTCAAGAGTTGCTGCCACTTCAAGCACTAGAAATTTGGACCTATTGAAAAGCTTGGGAGCTGATTTGGCTATTGATTACACAAAAGAAAACTTTGAAGATTTGTCAGAAAAATTTGATGTAGTCTATGATGCCATTGGGCAATGTGACAGGGCAGTGAAGGCTGTGAAAGAAGGTGGCAGTGTGGTAGCACTCACAGGTGCTGTTACCCCACCTGGTTTCAGATTTGTAGTTACTTCCAATGGAGCTGTTCTGAGGAAACTAAACCCTTACTTGGAAAGTGGAAAGGTGAAGCCAATTGTAGACCCTAAAGGTCCATTCTCCTTTGCCCAGCTTGCTGAAGCCTTCTCTTACCTTGAAACGAACAGAGCCACTGGAAAGGTTGTTATACATCCCATCCCTTGA 1176 0.4634 MQNMSLCASLSTTTSNLTSLPSSLPSTSPLSLRFSFPFRENRSSVTPLKAPFSARPARVLVKAQATAPASSEAVKLTPVPSQMKAWVYGEYGGVDVLKLDSNVAVPDVKEDQVLVKVVAAALNPVDAKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSKVKDFKVGDEVYGDVNEKALDGPKQFGSLAEYTAVEEKLLAPKPKNLDFAQAAALPLAIETAYEGLERTGFSPGKSILILNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLDLLKSLGADLAIDYTKENFEDLSEKFDVVYDAIGQCDRAVKAVKEGGSVVALTGAVTPPGFRFVVTSNGAVLRKLNPYLESGKVKPIVDPKGPFSFAQLAEAFSYLETNRATGKVVIHPIP 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02556 391 SMART PKS_ER_names_mod 92 387 IPR020843 GO:0016491
Spst3g02556 391 CDD MDR_like_2 83 387 - -
Spst3g02556 391 SUPERFAMILY GroES-like 80 237 IPR011032 -
Spst3g02556 391 Pfam Zinc-binding dehydrogenase 276 387 - -
Spst3g02556 391 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 205 328 IPR036291 -
Spst3g02556 391 Gene3D - 90 387 - -
Spst3g02556 391 Gene3D - 224 338 - -
Spst3g02556 391 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 232 253 IPR002364 GO:0008270|GO:0016491
Spst3g02556 391 Pfam Alcohol dehydrogenase GroES-like domain 111 173 IPR013154 -
Spst3g02556 391 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 74 391 IPR044626 GO:0016628
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02556 Spst-Chr3 73801147 73803679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02556 110 279 Monolignol Biosynthesis Gene Families AT4G37980 27.919 1.18e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02556 K18980 - gmx:100780585 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02556 3 73801147 73803679 Spst3g02556 3 73801147 73803679 ECH