Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02530 ATGCTCTCGGAAATGAATTGGGTTCATTCTCAAATCTGCCATAGCAGTGATGCTATCAACAACCCCACTAGTATTTCCACATCTTCTTGTTCTTCTTCTGCACCATTGCCTTACAATTCGGAGTATAAGAAACAACTGGCCCCTCCTCTAGCTTCTTCGTCTGGCAATAGAATAAGCCCTGCAATTGTTTTCATCTTTGTCATTCTAGCTATTGTGTTTTTCATCTCTGGTCTCCTTCACTTGCTTGTTAGATTTCTCATAAGGCACAGGTCCTCTTCATCAATTTCCCAGTCCAATAGGTACCCGGACATGTCTGAATCTGATCCTTACCAGAGGCAGTTACAACAGCTCTTTCATCTCCATGATTCAGGCCTAGATCAGGCCTTCATAGATGCTCTCCCGGTTTTCCTCTACAAAGACATAATAGGTTTGAAGGAGCCTTTTGATTGTGCAGTTTGCCTTTGCCAGTTCTCAGAACAAGACATGCTGAGGCTGCTGCCCCTTTGCAACCATGCTTTTCACATTGATTGCATAGACACATGGCTGCTCTCAAATTCAACTTGTCCTCTCTGCAGAGGGAGTCTTTATGAGTCAGGCTTTGCCTTTGAAAACCCAGTTTATGACTTTGACGGTCTGAGGGAGGAAGATGGGGTTTCGGGCAGTGTTGCTGGAGAGGCTGGTTCCTTTAATAAACATGCAGAAAATCACATAATGAGTGGGAAAAGGGTGTTTTCTGTGAGGCTTGGGAAGTTTAGAAGCTCAAATAATGGAGAGGGGGTGGAAAGAGGAGGAGGAGGAGGAGGGGAGAGCAGTACAAGTAATTTGGATGTTAGGAGATGCTATTCAATGGGGTCCTTCCAGTATGTGGTTGCTGATTCAGATTTGCAAGTGGCTTTGTGCTCCAATAGAGGTGATGTAGGAGGTGCCAGTGGAGGCAGTATGAGACAATTCAAAGGTAAATTGGCCCAGTATGGGAATTCTTCCACTGATGGGGATGTTGAGGGCAAAAAAATTAGCATTGCAAGGAAAGGGGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAAGAAGGATAAAGTGTCAACTTCATCACAAAACCATTTGGGTGGTTCTTATGTCACTGCATCTTTGCCATGGATGAATAGAACTCAAGGTACATGA 1164 0.4424 MLSEMNWVHSQICHSSDAINNPTSISTSSCSSSAPLPYNSEYKKQLAPPLASSSGNRISPAIVFIFVILAIVFFISGLLHLLVRFLIRHRSSSSISQSNRYPDMSESDPYQRQLQQLFHLHDSGLDQAFIDALPVFLYKDIIGLKEPFDCAVCLCQFSEQDMLRLLPLCNHAFHIDCIDTWLLSNSTCPLCRGSLYESGFAFENPVYDFDGLREEDGVSGSVAGEAGSFNKHAENHIMSGKRVFSVRLGKFRSSNNGEGVERGGGGGGESSTSNLDVRRCYSMGSFQYVVADSDLQVALCSNRGDVGGASGGSMRQFKGKLAQYGNSSTDGDVEGKKISIARKGESFSVSKIWQWSKKDKVSTSSQNHLGGSYVTASLPWMNRTQGT 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02530 387 CDD RING-H2_EL5-like 149 192 - -
Spst3g02530 387 Pfam Ring finger domain 149 192 IPR001841 -
Spst3g02530 387 SUPERFAMILY RING/U-box 129 198 - -
Spst3g02530 387 SMART ring_2 150 191 IPR001841 -
Spst3g02530 387 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Spst3g02530 387 FunFam RING-H2 finger protein ATL46 112 197 - -
Spst3g02530 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 199 IPR013083 -
Spst3g02530 387 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 53 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02530 Spst-Chr3 73341371 73342534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02530 77 360 C3H Transcription Factor Family AT2G18650 39.032 6.14e-54 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02530 - - gmx:100818135 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02530 3 73341371 73342534 Spst3g02530 3 73341371 73342534 ECH
Spst3g02530 3 73341371 73342534 Spst3g02530 3 73341371 73342534 PCT