Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02523 ATGACGGTGGATGAAGTGGTTAGTAGCTCCGAGTGGAGCAAAGAACAGGATAAAGCATTTGAAAATGCCCTGGCAATTCATCCAGAAGATGCTTCCGACAGATGGGAAAAGATTGCGGCTGATGTACCAGGGAAAACCTTGGAAGAGATTAAACACCACTACGAGGTCTTGGTTGAAGATGTTAACCAGATTGAATCTGGTTGTGTACCTTTGCCATCTTATAATTATTCTTCGGAGGGTTCTGCAAGCCATCCTAGTGATGAAGGAGCTGGCAGGAAGGGAGGCAATTCATGGAATAGTAATAATGAATCAAATCATGGAAATAAGGCTTCAAGATCAGATCAGGAACGACGAAAGGGTATTGCATGGACAGAGGATGAACACAGGTTATTTCTTCTTGGCTTGGAGAAGTATGGAAAAGGTGACTGGCGAAGTATATCAAGGAACTTTGTAGTAACAAGAACACCAACACAAGTTGCAAGCCATGCCCAGAAATACTTCATTCGTTTGAACTCGATGAATAAAGATAGAAGGCGATCCAGCATACATGATATCACCAGTGTCAACAATGGAGATGTTTCAGCACCTCAAGGACCAATTACTGGTCAAACAAATGGTTCTGCTGCAAACTCTGCTGGAAAATCAACCAAACCAGCCCCTCAAACCCCAACTGCTGCCCCAAGTGTAGGAATATATGCTGCTCCTACCATTGGACAACCTATAGGAGGACCCCTTGTATCTGCAGTCGGCACCCCAGTGAACCTTCCTACCCCGGCACACATGGCATATGGCCTCGGTGCCCCGGTTCCCGGGGCAGTTGTTCCTGGAGCACCAATTAACTTGGGTCCTGTGCCATACCCCATGCCACACACATCTGCTCACAGATGA 888 0.464 MTVDEVVSSSEWSKEQDKAFENALAIHPEDASDRWEKIAADVPGKTLEEIKHHYEVLVEDVNQIESGCVPLPSYNYSSEGSASHPSDEGAGRKGGNSWNSNNESNHGNKASRSDQERRKGIAWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDVSAPQGPITGQTNGSAANSAGKSTKPAPQTPTAAPSVGIYAAPTIGQPIGGPLVSAVGTPVNLPTPAHMAYGLGAPVPGAVVPGAPINLGPVPYPMPHTSAHR 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02523 295 MobiDBLite consensus disorder prediction 186 227 - -
Spst3g02523 295 CDD SANT 11 58 IPR001005 -
Spst3g02523 295 MobiDBLite consensus disorder prediction 76 119 - -
Spst3g02523 295 SUPERFAMILY Homeodomain-like 117 172 IPR009057 -
Spst3g02523 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 171 IPR017930 -
Spst3g02523 295 PANTHER TRANSCRIPTION FACTOR KUA1 7 291 - -
Spst3g02523 295 ProSiteProfiles Myb-like domain profile. 4 58 IPR001005 -
Spst3g02523 295 CDD SANT 122 167 IPR001005 -
Spst3g02523 295 ProSiteProfiles SANT domain profile. 123 171 IPR017884 -
Spst3g02523 295 FunFam Transcription factor SRM1 4 71 - -
Spst3g02523 295 FunFam transcription factor MYB1R1 121 172 - -
Spst3g02523 295 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Spst3g02523 295 ProSiteProfiles Myb-like domain profile. 115 167 IPR001005 -
Spst3g02523 295 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Spst3g02523 295 SMART sant 119 169 IPR001005 -
Spst3g02523 295 SMART sant 8 60 IPR001005 -
Spst3g02523 295 Gene3D - 121 173 - -
Spst3g02523 295 NCBIfam myb-like DNA-binding domain, SHAQKYF class 119 169 IPR006447 GO:0003677
Spst3g02523 295 MobiDBLite consensus disorder prediction 93 108 - -
Spst3g02523 295 Pfam Myb-like DNA-binding domain 122 167 IPR001005 -
Spst3g02523 295 Pfam Myb-like DNA-binding domain 10 55 IPR001005 -
Spst3g02523 295 Gene3D - 6 71 - -
Spst3g02523 295 MobiDBLite consensus disorder prediction 186 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02523 Spst-Chr3 73247163 73254757 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst3g02523 Myb_DNA-binding 4.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02523 - - gmx:100820272 525.398