Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02514 ATGTCGGTTTCATGCATCTCCGACTACGACCTCCTCTGCGCCGAGGACTCCTCCGGCATCCTTTCCGGAGATTCGCCGGAATGCTCCTCCGACATCGACTCCTCTCCCCCACCTCTGTCGCCTCCGCCTTCCACGGAGGACTATTCAATCGCCAGTTTCATCGAACACGAGCGCAACTTCGTCCCCGGATTCGAGTACCTCTCTAGGTTCCAATCTCGCTCCCTCGACGCCGACGCCAGAGAGGAATCCGTTGCATGGATTCTCAAGGTACACGCGTATTATGGCTTTCAACCTTTGACGGCGTACCTCGCCGTCAATTATATGGATCGATTTTTGGATTCTCGCCGGTTACCTGAAACAAATGGGTGGCCTCTGCAACTTCTATCTGTTGCATGTTTGTCTTTGGCGGCAAAGATGGAGGAACCTCTGGTTCCATCTCTGTTGGACCTTCAGATAGAAGGTGCCAAGTACATATTTGAGCCGAGAACAATTCGTAAGATGGAGCTGCTTGTTCTGGGTGTCTTGGATTGGAGGCTACGATCAGTAACCCCACTTTGTTTCCTCGCTTTCTTTGCGTGCAAAGTAGATTCAACGGGAACTTTTGCCAGCTTCCTTATTTCCCGGGCCACAGAAATCATCGTGTCTAATATTCAAGAGGCTAGCTTTCTTGCTTACAGGCCATCATGCATTGCTGCCGCAGCCATACTTTCTGCAGCTAATGAAATTCCAAATTGGTCTGTGCTTAAGCCTGAGCATGCTGAATCCTGGTGCGAGGGATTACGAAAAGAAAAAATTATAGGGTGCTACGAGTTGATGCAAGAACTTGTGATTAACAATAACCGCAGAAAACTCCCTAAAGTGTTGCCGCAGCTGCGAGTAACAACTCGGACCCGAATGAGGTCAAGTGTCTCATCATTATCATCCTCTTCGTCCTCCTTTTCCTTGTCTTGTAAGAGGAGGAAATTAAGTAACTGA 975 0.4903 MSVSCISDYDLLCAEDSSGILSGDSPECSSDIDSSPPPLSPPPSTEDYSIASFIEHERNFVPGFEYLSRFQSRSLDADAREESVAWILKVHAYYGFQPLTAYLAVNYMDRFLDSRRLPETNGWPLQLLSVACLSLAAKMEEPLVPSLLDLQIEGAKYIFEPRTIRKMELLVLGVLDWRLRSVTPLCFLAFFACKVDSTGTFASFLISRATEIIVSNIQEASFLAYRPSCIAAAAILSAANEIPNWSVLKPEHAESWCEGLRKEKIIGCYELMQELVINNNRRKLPKVLPQLRVTTRTRMRSSVSSLSSSSSSFSLSCKRRKLSN 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02514 324 PANTHER CYCLINS 53 280 IPR039361 -
Spst3g02514 324 FunFam D2/4-type cyclin 63 180 - -
Spst3g02514 324 SUPERFAMILY Cyclin-like 50 179 IPR036915 -
Spst3g02514 324 MobiDBLite consensus disorder prediction 22 44 - -
Spst3g02514 324 SMART Cyclin_C_2 182 309 IPR004367 -
Spst3g02514 324 SUPERFAMILY Cyclin-like 164 279 IPR036915 -
Spst3g02514 324 Pfam Cyclin, C-terminal domain 182 296 IPR004367 -
Spst3g02514 324 Pfam Cyclin, N-terminal domain 51 179 IPR006671 -
Spst3g02514 324 Gene3D - 52 246 - -
Spst3g02514 324 MobiDBLite consensus disorder prediction 302 324 - -
Spst3g02514 324 CDD CYCLIN_AtCycD-like_rpt1 79 177 - -
Spst3g02514 324 Gene3D - 63 180 - -
Spst3g02514 324 ProSitePatterns Cyclins signature. 80 111 IPR006671 -
Spst3g02514 324 SMART cyclin_7 85 173 IPR013763 -
Spst3g02514 324 CDD CYCLIN_AtCycD-like_rpt2 182 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02514 Spst-Chr3 73047393 73050277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02514 1 324 Core Cell Cycle Gene Families AT1G70210 63.110 4.22e-134 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02514 K18810 - gmx:100818190 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02514 3 73047393 73050277 Spst3g02514 3 73047393 73050277 ECH
Spst3g02514 3 73047393 73050277 Spst3g02514 3 73047393 73050277 PCT