Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02508 ATGATTGTCACTCGTTCTGCTTTGATGCTTCATCTCCAAAACCCACCAATTCGCTACCACTTCTTCTCCCACTTTCTCAAACCCACCTTCCCTTCTCTGTTCAAACCTCGTCCTTTCTCTCTAAACACTCCACGCCAAGCACAGACTAGGCCGTTTGTAAGCGCTGTTGCATCATCATCGTCATCTTCATCTTCATCATCACAAGGTTCTAATGGGAGAGACACTTTCTTTGCACAAGAAAACGTTTCGTGGACTTCACTCGGTCTCTCTGATACCATTTCTCGAGCGCTCTCTGACATTGGCCTCAATAGACCCTCTCTCGTTCAGGCTTCTTCGGTACCATCTGTGCTGTCAGGGAAGGATGTTATTATTGCAGCGGAGACTGGGAGTGGTAAGACATACAGTTACCTAGTTCCTCTAATTGATAAGCTAAGGGATGCCCAGGAACAATCTCTACATGCTGTGTCTCATCAAGAAGTGACCTCCCCACAGAAAGTTCTGCTCATCCTTTGTCCGAATGTGCAACTTTGTGAGCAGGTAGTTAGGATGGCTAACAGTTTATGTAGAGATGATGGTGAGGCGATAGTCAGTGTGGCAGCCATTTGTGGCAGACAGGGATGGCCAATTCGGGAGCCTGATGTCATTGTGACAACACCTGCTGCCCTTCTGAATTATGTTGACCTTGATAGAACGCGCCGCATGGAATTTATGCGTGGTGTTAAATATGTGGTTTTTGATGAAGCTGACATGCTTCTCTGTGGGAGCTTCCAGAATAAAGTAATCCGCCTGATAAACTTGCTCCGCTTTGATGAAAAAGTCTTGTCTCGATCCAAAAAATCAGTAGCAGAGTTTTCAATGAAACAGGAATATTCCTTGTCATCAGAAGATGCTTTTGAAGGTGAAGGGGAACTTCTAACTGAAGCCACCTTAGAAGAGGACGAAATTGTTGATATTAATAATGAAGATGAATCTGTCAAGCAAAGAGACTGGAGAAGAGTGAGGAAATATTATGAGCGTAGTAAACAGTATGTTTTTGTTGCTGCTACACTTCCAGTGAATGGAAAGAAGACAGCTGGAGGGATATTGAAATATATGTTTCCTGATGCTGAGTGGGTTTGTGGAAACTATCTGCATTGTCACAATCCGAGATTGGAGCAAAAATGGATAGAAGTTACTGTTGATACTCAAGTGGATGAACTCATAAAGGCTGTGAATCACAGTTTCAGATCCGAAGATTTGCTTAATGCTGGTGGCATTCACAGAACAATGGTGTTTGCCAACACTGTTGAGGCTGTAGAAGCTGTGGCAAAGATATTAATCCGATCTGGGATTGAATGTTCTCGTTATCATAAGAATTGCACATTGGAAGAGCGAGCACAGACATTAGTTGATTTTCATGACAAAGGTGGTGTTCTTGTATGTACTGATGCTGCTGCTCGTGGTGTTGATATTCCAAATGTTTTACATGTTATTCAGGCAGATTTTGCTACTTCTGCTGTAGACTTTTTGCATAGAGTTGGTCGTACAGCTAGAGCTGGTCAAATTGGACTTGTTACTAGCATGTACACCGAATCCAATAGGGAACTTGTTGATGCAGTTCGTTGGGCAGAGGAACGTGGTCAACCTGTGGAAACTGCATTTAGCAGGAAAAGAAGCTTCCGCAACAAGCTCAAGAAAAGGGGTATTAAAGTGAGAGATTCAGCAACTATTAAAGAGAGTGCTTTAGCATCAGAATACTAG 1740 0.431 MIVTRSALMLHLQNPPIRYHFFSHFLKPTFPSLFKPRPFSLNTPRQAQTRPFVSAVASSSSSSSSSSQGSNGRDTFFAQENVSWTSLGLSDTISRALSDIGLNRPSLVQASSVPSVLSGKDVIIAAETGSGKTYSYLVPLIDKLRDAQEQSLHAVSHQEVTSPQKVLLILCPNVQLCEQVVRMANSLCRDDGEAIVSVAAICGRQGWPIREPDVIVTTPAALLNYVDLDRTRRMEFMRGVKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKVLSRSKKSVAEFSMKQEYSLSSEDAFEGEGELLTEATLEEDEIVDINNEDESVKQRDWRRVRKYYERSKQYVFVAATLPVNGKKTAGGILKYMFPDAEWVCGNYLHCHNPRLEQKWIEVTVDTQVDELIKAVNHSFRSEDLLNAGGIHRTMVFANTVEAVEAVAKILIRSGIECSRYHKNCTLEERAQTLVDFHDKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRVGRTARAGQIGLVTSMYTESNRELVDAVRWAEERGQPVETAFSRKRSFRNKLKKRGIKVRDSATIKESALASEY 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02508 579 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 92 550 - -
Spst3g02508 579 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 525 IPR027417 -
Spst3g02508 579 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 82 110 IPR014014 GO:0003724
Spst3g02508 579 SMART ultradead3 101 387 IPR014001 -
Spst3g02508 579 CDD DEADc 93 274 - -
Spst3g02508 579 SMART helicmild6 433 513 IPR001650 -
Spst3g02508 579 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 396 561 IPR001650 -
Spst3g02508 579 Pfam DEAD/DEAH box helicase 108 273 IPR011545 GO:0003676|GO:0005524
Spst3g02508 579 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 113 368 IPR014001 -
Spst3g02508 579 CDD SF2_C_DEAD 384 522 - -
Spst3g02508 579 Pfam Helicase conserved C-terminal domain 420 513 IPR001650 -
Spst3g02508 579 Gene3D - 53 365 IPR027417 -
Spst3g02508 579 Gene3D - 385 579 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02508 Spst-Chr3 72961634 72967123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02508 327 534 Eukaryotic Initiation Factors Gene Family AT5G11200 25.941 2.04e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02508 - - gmx:100789323 978.778