Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02500 ATGGACTCTAACACTGTCGTTTCATGGCCGAGGATGTCGGAAAACATCGACGGTTTCGGTCTCTCACCGAAGAAATCAGATGAGGTTCATGTTTTAGCCGTTGATGACAGCCTTGTTGATCGCAAAGTCATCGAACATTTGCTCAAAGTCTTAGCTTGTAAAGTTACTGCTGTGGATAGTGGGCTGAGAGCACTGCAATTGCTTGGACTATTGGACGACCAGAAAATTCCCTCTGAAACTAATGATTTTGTTGGTTTAAAGGTGGATCTAATTATCACCGACTACTGTATGCCTGGCATGACCGGTTATGAATTGCTCAAGAAAATCAAGGAATCGTCCACTTTCAAGGAAACTCCTGTGGTGATTATGTCCTCTGAAAACGTTTTGCCACGCATAGACAGATGTTTGGAGGAGGGTGCAGAGGATTTCATAGTGAAGCCAGTGAAGTTATCTGACGTGAAGCGTTTGAAGGATTACATGACAACGAAGGAGGTTAGGGGTGAAAGCCAAGGTAGGGAAGGGATCCACAAAAGGAAGCTATTAGACACCTCTGATGTGTCATCATCATCATCACCACCGTCCATTTCCTCATCATCACTTCCATCTGCACCCTCAGTCATCGACTCTCCAACCAGACGGCTTAAAATGGCCAGCACTGACTGA 663 0.4525 MDSNTVVSWPRMSENIDGFGLSPKKSDEVHVLAVDDSLVDRKVIEHLLKVLACKVTAVDSGLRALQLLGLLDDQKIPSETNDFVGLKVDLIITDYCMPGMTGYELLKKIKESSTFKETPVVIMSSENVLPRIDRCLEEGAEDFIVKPVKLSDVKRLKDYMTTKEVRGESQGREGIHKRKLLDTSDVSSSSSPPSISSSSLPSAPSVIDSPTRRLKMASTD 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02500 220 MobiDBLite consensus disorder prediction 184 220 - -
Spst3g02500 220 Pfam Response regulator receiver domain 31 153 IPR001789 GO:0000160
Spst3g02500 220 CDD REC_typeA_ARR 31 156 - -
Spst3g02500 220 MobiDBLite consensus disorder prediction 164 183 - -
Spst3g02500 220 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 187 IPR045279 GO:0009736
Spst3g02500 220 SMART REC_2 29 160 IPR001789 GO:0000160
Spst3g02500 220 Gene3D - 29 195 - -
Spst3g02500 220 ProSiteProfiles Response regulatory domain profile. 30 161 IPR001789 GO:0000160
Spst3g02500 220 MobiDBLite consensus disorder prediction 164 220 - -
Spst3g02500 220 SUPERFAMILY CheY-like 29 156 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02500 Spst-Chr3 72872766 72873856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02500 7 210 Response Regulator Gene Family AT1G59940 59.809 4.87e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst3g02500 Response_reg 2.7e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02500 K14492 - gmx:100527828 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02500 3 72872766 72873856 Spst3g02500 3 72872766 72873856 ECH
Spst3g02500 3 72872766 72873856 Spst9g02281 9 53519564 53521357 ECH
Spst3g02500 3 72872766 72873856 Spst3g02500 3 72872766 72873856 PCT