Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02493 ATGCAAAATTTGCTTTCTTGTTTCTCTTTGTTAGGATTAGGCTCTGCGGGGGTGATCTGTGTGCAATTCGGGGCTGGAAATCTTGCTTTTGTTTCAGGCTTTTGTGAATTCCCTGCGGTTAGATCTGCTTCCTGCTGTTTTCTTTTGTTCGAATGTGAAAGAATGAAGAGGTCAAGGGATGATGTTTACATGAGTTCACAACACAAACGGCCTATGGTGTCTTCTAGAGGAGAACCCTCGGGGCAACCACAGTTGATGAGTGGTGGTGGTCAGAGGCTAACCACAAATGATGCCTTGGCATATCTCAAAGCAGTAAAGGATATGTTTCAAGATAAGAGGGAAAAGTATGATGACTTTCTGGAAGTAATGAAGGATTTCAAGGCTCAAAGAATTGATACAACAGGTGTCATAGCAAGAGTGAAGGATCTGTTTAAAGGGCACAAAGATCTAATTTTGGGATTTAACACCTTCTTGCCAAAGGGATATGAAATTACACTTCCATTGGAAGATGAGCAACCTCCCCAAAAGAAGCCTGTTGAATTTGCAGAAGCCATAAGTTTTGTGGGCAAGATTAAGACTCGCTTTCAAAGCAATGATAGTGTTTATAAGTCATTTCTAGACATATTAAATATGTACAGAAAGGAAACCAAGTCTATCACTGAGGTTTACGAGGAGGTTGCTGCACTTTTTCAGGACCATGCAGACCTTCTTGAGGAGTTTACTCATTTTCTTCCGGATACTTCAGGAATAGCCTCTAATCACTATGCTTCTGCTCGAAATCCTCTGCTTCGTGATAGGAGCTCTGCAATGCCAACAGTGAGGCAAATGCATGTTGAAAAGAGAGAAAGGAACATTGCTTCACATGGTGATCGTGACCTCAGTGTTGACCATCCTGATCCAGAACTTGACAGATGTTTAATTAAGGTTGAAAAGGATCAGCGGAGGCGTGGTGAGAAGGAAAAGGAAAGTAGAGAAGAGAAAGATAGGAGACAGCGGGAAAGGGATGATAGAGATTATGATCATGATGGTAGTAGGGAGAATTTATCTCACAAGCGTAAATCTGGTTGTATGGCTGGAGACTCTAGTGCTGAACCATTGCATGATACTGACGAAAATTTTGGCATGCATCCTGTCTCGTATGCTCATGAGGATAAAAGTTCTTTGAAAAGTGCTCCAGTGATTGGTTACCTTGACAAAGTGAAGGAGAAATTACGAAATCCCGAGGATTACCAGGAATTTTTGAAGTGCCTAAATATCTACTGCAAGGAAATAATTGCCCGTCATGAATTGCAATCATTGGAAGAGCTTTCCAAATACACTCAAGCTCCAACATCCTCCATGTTGAGATATGTGGGCAATTTACTGGGAAAATATGCAGATCTTATGGAGGGATTTGATGAATTTTTGTCTCAATGTGAGAAGAATGAAGGATTCCTTGCTGGTCTCCTGAAAAAAAGTAAGTAA 1464 0.4112 MQNLLSCFSLLGLGSAGVICVQFGAGNLAFVSGFCEFPAVRSASCCFLLFECERMKRSRDDVYMSSQHKRPMVSSRGEPSGQPQLMSGGGQRLTTNDALAYLKAVKDMFQDKREKYDDFLEVMKDFKAQRIDTTGVIARVKDLFKGHKDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFAEAISFVGKIKTRFQSNDSVYKSFLDILNMYRKETKSITEVYEEVAALFQDHADLLEEFTHFLPDTSGIASNHYASARNPLLRDRSSAMPTVRQMHVEKRERNIASHGDRDLSVDHPDPELDRCLIKVEKDQRRRGEKEKESREEKDRRQRERDDRDYDHDGSRENLSHKRKSGCMAGDSSAEPLHDTDENFGMHPVSYAHEDKSSLKSAPVIGYLDKVKEKLRNPEDYQEFLKCLNIYCKEIIARHELQSLEELSKYTQAPTSSMLRYVGNLLGKYADLMEGFDEFLSQCEKNEGFLAGLLKKSK 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02493 487 MobiDBLite consensus disorder prediction 279 365 - -
Spst3g02493 487 SUPERFAMILY PAH2 domain 91 160 IPR036600 GO:0006355
Spst3g02493 487 Gene3D Paired amphipathic helix 97 159 IPR036600 GO:0006355
Spst3g02493 487 SUPERFAMILY PAH2 domain 391 472 IPR036600 GO:0006355
Spst3g02493 487 Gene3D Paired amphipathic helix 175 248 IPR036600 GO:0006355
Spst3g02493 487 MobiDBLite consensus disorder prediction 279 353 - -
Spst3g02493 487 ProSiteProfiles PAH domain profile. 384 472 IPR003822 GO:0006355
Spst3g02493 487 Pfam Paired amphipathic helix repeat 201 244 IPR003822 GO:0006355
Spst3g02493 487 Pfam Paired amphipathic helix repeat 408 469 IPR003822 GO:0006355
Spst3g02493 487 Pfam Paired amphipathic helix repeat 114 158 IPR003822 GO:0006355
Spst3g02493 487 MobiDBLite consensus disorder prediction 63 90 - -
Spst3g02493 487 ProSiteProfiles PAH domain profile. 91 161 IPR003822 GO:0006355
Spst3g02493 487 FunFam Paired amphipathic helix SIN3-like protein 176 247 - -
Spst3g02493 487 Gene3D Paired amphipathic helix 385 474 IPR036600 GO:0006355
Spst3g02493 487 ProSiteProfiles PAH domain profile. 177 247 IPR003822 GO:0006355
Spst3g02493 487 PANTHER SIN3B-RELATED 92 474 IPR039774 GO:0003714
Spst3g02493 487 MobiDBLite consensus disorder prediction 68 90 - -
Spst3g02493 487 SUPERFAMILY PAH2 domain 173 246 IPR036600 GO:0006355
Spst3g02493 487 FunFam Paired amphipathic helix protein Sin3 97 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02493 Spst-Chr3 72743487 72747143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02493 82 173 WRKY Transcription Factor Family AT4G12020 61.702 9.23e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst3g02493 PAH 2.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02493 K11644 - ccaj:109792823 692.189