Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02491 ATGAGTAGTGGTGATGATGAGAGACTAATCAGAAATGAGGCCTTGGCATATTGCAGTGCACTACGGTACGTGTTTCGAGATAAGACAGAAAAGTATGAAGCCTTTTTGGAAATTACCAAGGGTTTCAAGGCTCGAAGAGTTGATGTAGAAGGTGTGATAGCGAGAATGAAGGAGTTGTTGAAAGGGCACAATGATCTACTTTTGCGATTTAACACTTTCTTGCCAAGTGAATATCAAATTACACTTTCCTTGGACGACGATCTACCTCCCAGAAAGAGAGGCAGAACGATGCACATTAAATCCGAGGAAGAAGAAGAACTTGATAGGAGTTTGACAGAGACTGATCGAAATCAGAGGCATGGTGCGAAGGAAAAGAACCATGGAGACTATGATCGTGACAGTACTAATGAAGAGCATTTATCTAAGAAGCGAAAATCTCCTTGGAGGGATGAAGAATCTGATGATGACTCTGATACAACTTTTGGCATGCACCCTGATTCAAGTTCTTTGAAAAAAATGAAGAGGTCATGGGAAGTTGGTAGCACAAGTTCACAACTCAAAAAACCTCTTGTTTCAGTCTCTTCTAGAGAATTCACGGGGCGACCACAGATGAGAAGTGGTCGGGGTCAGAAAATAACCATGTCTGATGCCATGTCATATCTCAAGGCAGTAAAGGTAGCACTTCGAGATAAGAAAGAAAAGTATATTGAATTTATGGAAGTTATGAAGGATGTCAAGGATGAAAGAATTGATATAACATGCCTCATAGCAAAACTGAAGGAGCTGTTTAAAGGGAACAAAGATCTAATTTTACGATTTAACAAATTCTTGTCAAAGGAATATAAAATTACACTTTCATGGGAGGATGAACAACTTTCCCAGCACACGTACTCTAATTCATCGGCATCTGTATTTGAGGATCCAAGTTCTTTGAAAGGTATCTATAATCGGTTGTTAGATTACCTTAAAGAAGTCAACAAGAAATTACAAAATCCTGAGGATTTCCAGAAGTTTTTGAAATACCTACATATCTACAGCATGGAAATCATTAATAGACAAGAACTGCAATTATTGGTGAGCAATTTACTGGAAAAATATGCAGATCTAATAGAGGGATTTGCTGAATTTTTGGCTCAACATGAGAAGAGTGAAGGATTGCTTGCTGTTGTCTTGAATGAAAGGCATGAACCAGAATCATTGAAGGTAGAGGACAGAGATCCAGATCCTCAGGGGATGACAAGATGA 1245 0.3888 MSSGDDERLIRNEALAYCSALRYVFRDKTEKYEAFLEITKGFKARRVDVEGVIARMKELLKGHNDLLLRFNTFLPSEYQITLSLDDDLPPRKRGRTMHIKSEEEEELDRSLTETDRNQRHGAKEKNHGDYDRDSTNEEHLSKKRKSPWRDEESDDDSDTTFGMHPDSSSLKKMKRSWEVGSTSSQLKKPLVSVSSREFTGRPQMRSGRGQKITMSDAMSYLKAVKVALRDKKEKYIEFMEVMKDVKDERIDITCLIAKLKELFKGNKDLILRFNKFLSKEYKITLSWEDEQLSQHTYSNSSASVFEDPSSLKGIYNRLLDYLKEVNKKLQNPEDFQKFLKYLHIYSMEIINRQELQLLVSNLLEKYADLIEGFAEFLAQHEKSEGLLAVVLNERHEPESLKVEDRDPDPQGMTR 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02491 414 ProSiteProfiles PAH domain profile. 307 380 IPR003822 GO:0006355
Spst3g02491 414 ProSiteProfiles PAH domain profile. 210 280 IPR003822 GO:0006355
Spst3g02491 414 Pfam Paired amphipathic helix repeat 334 377 IPR003822 GO:0006355
Spst3g02491 414 Pfam Paired amphipathic helix repeat 30 74 IPR003822 GO:0006355
Spst3g02491 414 Pfam Paired amphipathic helix repeat 233 277 IPR003822 GO:0006355
Spst3g02491 414 MobiDBLite consensus disorder prediction 86 152 - -
Spst3g02491 414 FunFam Paired amphipathic helix protein Sin3 216 278 - -
Spst3g02491 414 PANTHER SIN3B-RELATED 12 105 IPR039774 GO:0003714
Spst3g02491 414 FunFam Paired amphipathic helix protein Sin3 13 75 - -
Spst3g02491 414 ProSiteProfiles PAH domain profile. 7 77 IPR003822 GO:0006355
Spst3g02491 414 SUPERFAMILY PAH2 domain 310 378 IPR036600 GO:0006355
Spst3g02491 414 MobiDBLite consensus disorder prediction 84 209 - -
Spst3g02491 414 SUPERFAMILY PAH2 domain 209 279 IPR036600 GO:0006355
Spst3g02491 414 MobiDBLite consensus disorder prediction 174 209 - -
Spst3g02491 414 Gene3D Paired amphipathic helix 216 277 IPR036600 GO:0006355
Spst3g02491 414 Gene3D Paired amphipathic helix 13 75 IPR036600 GO:0006355
Spst3g02491 414 Gene3D Paired amphipathic helix 312 381 IPR036600 GO:0006355
Spst3g02491 414 SUPERFAMILY PAH2 domain 8 76 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02491 Spst-Chr3 72675884 72679689 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02491 2 89 WRKY Transcription Factor Family AT4G12020 47.727 3.04e-17 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst3g02491 PAH 2.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02491 K11644 - gmx:106799801 194.512