Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02490 ATGATGAGTGAAGGTGGTAAAGTACCAATTACTCGAGAGGATGCCTTAGCATATCTGAAGAAAGTGAAAGATGTATTACAAGATAAGAGGGAAGAGTATGATTACTTTATGACGTTTCATGAAGGATTTCCGAGAGAAAAGATGAATATCAAATCAAAACTTCCATTGGCGGACAAAAGCCCCCCTCCTAGGCCTGGTGGATATGAAGCAGCTACGAATTTTGTGAACAAAGTTAAGGTAAAATCTGTTGAATGTGGATTCTGTCATACTCGGTTTCATGGGAATGATCATGTTAACGTTTACAGATCCTTTCTAGACATAATGAACACATTGAGTGAGGAAAAGAAGTCTATTACTGAGGCTTACAAGGAGGTCTGTTTTCCATCCCCTCATGTTACAGCACTTTTCCAAGGCCATGAAGATTTTCTTGGTGAGTTGAAACAGTTTTTTCCGGGTACTTCAGGAGCAGCCTTTACTTAA 480 0.3937 MMSEGGKVPITREDALAYLKKVKDVLQDKREEYDYFMTFHEGFPREKMNIKSKLPLADKSPPPRPGGYEAATNFVNKVKVKSVECGFCHTRFHGNDHVNVYRSFLDIMNTLSEEKKSITEAYKEVCFPSPHVTALFQGHEDFLGELKQFFPGTSGAAFT 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02490 159 ProSiteProfiles PAH domain profile. 64 153 IPR003822 GO:0006355
Spst3g02490 159 PANTHER SIN3B-RELATED 11 155 IPR039774 GO:0003714
Spst3g02490 159 Gene3D Paired amphipathic helix 70 151 IPR036600 GO:0006355
Spst3g02490 159 Pfam Paired amphipathic helix repeat 100 150 IPR003822 GO:0006355
Spst3g02490 159 SUPERFAMILY PAH2 domain 9 39 IPR036600 GO:0006355
Spst3g02490 159 SUPERFAMILY PAH2 domain 62 151 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02490 Spst-Chr3 72661157 72667006 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst3g02490 PAH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02490 K11644 - cit:102612187 117.087