Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02489 ATGAGTGAAGGTCGTGAAAAAATGACAAAAACGGAAGCCATAGAATATCTAAGAGAAGTGCAAAAGAAATTTGAAGACAAGAACGAAGAGTTCCAAAAGTTTTTGGATATCATGACCTATTTTAGAATTCATAGAATTGATGTTGGGACTGTGGTGGAACAAGTGGGGGAGATTCTCAGATGCCATGATGATCTCATTCTGGGATTTAACAAGTTCTTGCCAAAGGGATATGAAATCCTTCTTCCACCCAAGGGTGCAGTTCAGATGGAAGATGCTGTCAAATATGTGCAGAAGATTAAGGATCGTTTTCGAAACAAATATCATATCTACAGTACATTTGTGAAGATATTATCTAGTAGGAAGCAAAATCACATGCCTGTTCAGCAAGTGTTCAATGAAGTAAGTGTTGTCTATCTATCTGCTCTTGAATTTCTTCTTTCTGATTCACTTTAG 453 0.3687 MSEGREKMTKTEAIEYLREVQKKFEDKNEEFQKFLDIMTYFRIHRIDVGTVVEQVGEILRCHDDLILGFNKFLPKGYEILLPPKGAVQMEDAVKYVQKIKDRFRNKYHIYSTFVKILSSRKQNHMPVQQVFNEVSVVYLSALEFLLSDSL 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02489 150 Gene3D Paired amphipathic helix 82 145 IPR036600 GO:0006355
Spst3g02489 150 SUPERFAMILY PAH2 domain 83 136 IPR036600 GO:0006355
Spst3g02489 150 ProSiteProfiles PAH domain profile. 85 150 IPR003822 GO:0006355
Spst3g02489 150 PANTHER SIN3B-RELATED 11 136 IPR039774 GO:0003714
Spst3g02489 150 ProSiteProfiles PAH domain profile. 5 76 IPR003822 GO:0006355
Spst3g02489 150 FunFam Paired amphipathic helix protein Sin3 12 74 - -
Spst3g02489 150 Pfam Paired amphipathic helix repeat 30 73 IPR003822 GO:0006355
Spst3g02489 150 Gene3D Paired amphipathic helix 12 74 IPR036600 GO:0006355
Spst3g02489 150 SUPERFAMILY PAH2 domain 6 77 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02489 Spst-Chr3 72657627 72658346 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02489 8 126 WRKY Transcription Factor Family AT4G12020 26.891 1.18e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst3g02489 PAH 4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02489 K11644 - var:108321439 183.726