Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02486 ATGTTATTAAAAAAAGCAGCAACCAAAGATGATGTAATAGCATTTGCCAACGCAGTAAAGTATACATTAGGAGATGAGAAAGAAAAGTACGTACACTTTTTGGACATAATGAATGATTACGGGAATCAAAGAATTGATGTGGTGATTGCCATGGAAAGGATGAAGGAGCTATTCAAAGGACATGGAGATTTACTTTTGGGATTTAATGCCTTGTTGCCAAAGGAATGTGAAATCACACTTTCATGTGAGGATGAACAACCACCACAGAAAAGGAAAAAGCATGTTGGATTTTCAGAAGACAAAAATTTCAGGGGCAAGACAGAGGACGACGCGGATCTTGTTCTTGAGTTGGCTAATTTTTGTAAGGCAGAGGTAGAGAAGATGAAGGCCGCAGGCAACACAAATGAATGA 411 0.3869 MLLKKAATKDDVIAFANAVKYTLGDEKEKYVHFLDIMNDYGNQRIDVVIAMERMKELFKGHGDLLLGFNALLPKECEITLSCEDEQPPQKRKKHVGFSEDKNFRGKTEDDADLVLELANFCKAEVEKMKAAGNTNE 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02486 136 Gene3D Paired amphipathic helix 11 73 IPR036600 GO:0006355
Spst3g02486 136 PANTHER SIN3B-RELATED 8 107 IPR039774 GO:0003714
Spst3g02486 136 ProSiteProfiles PAH domain profile. 4 75 IPR003822 GO:0006355
Spst3g02486 136 SUPERFAMILY PAH2 domain 4 74 IPR036600 GO:0006355
Spst3g02486 136 Pfam Paired amphipathic helix repeat 28 70 IPR003822 GO:0006355
Spst3g02486 136 FunFam Paired amphipathic helix protein Sin3 11 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02486 Spst-Chr3 72627486 72628177 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02486 8 87 WRKY Transcription Factor Family AT4G12020 46.250 2.15e-15 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst3g02486 PAH 7.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02486 K11644 - gmx:100781798 105.531