Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02483 ATGTATATGGCGGAGAAGGACGGGATCATGCTCTTTGGCGTGCGCCTTACCGTAGCCGATAGAATCCCCACCCCACCGCCGCGCCATCCCAATGCGGGCTACGTCCACGACGTCGTTCATCCCTCCCGTCGCAAGCGCAAACGAGGGGTTCCGTGGACGGAGGAGGAGCACAGGCGGTTCCTGTTGGGATTACAGAAAGTTGGCAAAGGAGATTGGAGAGGAATTTCTAGAAACTTCGTCAAGACTCGAACGTCCATTCAGATCGCTAGTCACGCTCAAAAATATTTTCTCCGCCGTCATACTCACAATCGCCGAAGCCGGAGATCTAGTCTCTTCGATATCACCACGGAATCGGTGAAGGAAGAGGAACAAGTGTTCCCGTCAACTAGGTTGAAACCGGTACCTTCGTCTTTGAAGATGACTGAGTTGAACTTAAGTGGGAAGTCGCTGCCGCTGAAGATGCCGGCGTCGACGGAGCCATCGCGAGAGACTTTTGAGGTGGGAAGTTGA 510 0.5373 MYMAEKDGIMLFGVRLTVADRIPTPPPRHPNAGYVHDVVHPSRRKRKRGVPWTEEEHRRFLLGLQKVGKGDWRGISRNFVKTRTSIQIASHAQKYFLRRHTHNRRSRRSSLFDITTESVKEEEQVFPSTRLKPVPSSLKMTELNLSGKSLPLKMPASTEPSRETFEVGS 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02483 169 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 100 IPR017930 -
Spst3g02483 169 SUPERFAMILY Homeodomain-like 45 99 IPR009057 -
Spst3g02483 169 Gene3D - 52 100 - -
Spst3g02483 169 FunFam transcription factor MYB1R1 50 101 - -
Spst3g02483 169 Pfam Myb-like DNA-binding domain 51 96 IPR001005 -
Spst3g02483 169 PANTHER TRANSCRIPTION FACTOR KUA1 27 131 - -
Spst3g02483 169 NCBIfam myb-like DNA-binding domain, SHAQKYF class 47 98 IPR006447 GO:0003677
Spst3g02483 169 MobiDBLite consensus disorder prediction 149 169 - -
Spst3g02483 169 ProSiteProfiles Myb-like domain profile. 44 96 IPR001005 -
Spst3g02483 169 CDD SANT 51 96 IPR001005 -
Spst3g02483 169 SMART sant 48 98 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02483 Spst-Chr3 72604646 72605362 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst3g02483 Myb_DNA-binding 2.5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02483 - - gmx:778091 221.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02483 3 72604646 72605362 Spst3g02483 3 72604646 72605362 ECH
Spst3g02483 3 72604646 72605362 Spst2g01505 2 13804667 13806010 PCT